miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 5' -54.2 NC_001798.1 + 52 0.7 0.779033
Target:  5'- uUGGGGggggGCGcgaaggcGGGCGGCGGCgGCGg -3'
miRNA:   3'- uACCCUaaaaUGC-------UCCGCCGCUG-CGU- -5'
5140 5' -54.2 NC_001798.1 + 1859 0.69 0.825331
Target:  5'- -cGGcGUUgacgacgAUGAGGCGGCGGuCGCAg -3'
miRNA:   3'- uaCCcUAAaa-----UGCUCCGCCGCU-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 2266 0.78 0.385262
Target:  5'- -cGGGGg---GCGGGGCGGCGcaGCGCGc -3'
miRNA:   3'- uaCCCUaaaaUGCUCCGCCGC--UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 2506 0.69 0.833887
Target:  5'- -cGGGGcgcgGCGGccgcGGCGGCGGCGUc -3'
miRNA:   3'- uaCCCUaaaaUGCU----CCGCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 2606 0.69 0.841425
Target:  5'- -cGGGGggc-GCGGGGCgccgcccGGCGGCGCc -3'
miRNA:   3'- uaCCCUaaaaUGCUCCG-------CCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 8792 0.67 0.925431
Target:  5'- -cGGGAcgg-GCGAGGCcGCGGgGUAa -3'
miRNA:   3'- uaCCCUaaaaUGCUCCGcCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 9120 0.67 0.913947
Target:  5'- -gGGGAgccgccGCGAGGUGGUcugcggcacgcgGGCGCGg -3'
miRNA:   3'- uaCCCUaaaa--UGCUCCGCCG------------CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 10280 0.66 0.930801
Target:  5'- -aGGGugcgu-CGGGGgGGCGACGgGg -3'
miRNA:   3'- uaCCCuaaaauGCUCCgCCGCUGCgU- -5'
5140 5' -54.2 NC_001798.1 + 12256 0.69 0.85042
Target:  5'- cGUGGGGccgcggACGAccaGGcCGGUGGCGCAg -3'
miRNA:   3'- -UACCCUaaaa--UGCU---CC-GCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 12339 0.68 0.88664
Target:  5'- -cGGGAUcggacggguCGAGGUGGCugugGGCGCGg -3'
miRNA:   3'- uaCCCUAaaau-----GCUCCGCCG----CUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 12605 0.71 0.760809
Target:  5'- uUGGGGgccaucUGAGcGCGGCGGCGUAc -3'
miRNA:   3'- uACCCUaaaau-GCUC-CGCCGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 12710 0.68 0.873658
Target:  5'- cUGGGGgcg-GCgGGGGCGugguGCGGCGCGa -3'
miRNA:   3'- uACCCUaaaaUG-CUCCGC----CGCUGCGU- -5'
5140 5' -54.2 NC_001798.1 + 14320 0.68 0.888036
Target:  5'- -gGGGGUgcgugGgGAGGCGuGCGGuCGCGu -3'
miRNA:   3'- uaCCCUAaaa--UgCUCCGC-CGCU-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 14982 0.74 0.555558
Target:  5'- -cGGGAgcuuggGCGGGGgGGCGAgGCGu -3'
miRNA:   3'- uaCCCUaaaa--UGCUCCgCCGCUgCGU- -5'
5140 5' -54.2 NC_001798.1 + 15086 0.73 0.611413
Target:  5'- uUGGGGUUcggaguucggaagGCGAGGcCGGUGGCGCu -3'
miRNA:   3'- uACCCUAAaa-----------UGCUCC-GCCGCUGCGu -5'
5140 5' -54.2 NC_001798.1 + 15281 0.68 0.894875
Target:  5'- -cGGGuuccggGCGuGGCGGUGGuCGCGg -3'
miRNA:   3'- uaCCCuaaaa-UGCuCCGCCGCU-GCGU- -5'
5140 5' -54.2 NC_001798.1 + 15348 0.72 0.700764
Target:  5'- -cGGGGg---GCGAGGCGGUGAgGgGg -3'
miRNA:   3'- uaCCCUaaaaUGCUCCGCCGCUgCgU- -5'
5140 5' -54.2 NC_001798.1 + 19059 0.66 0.949804
Target:  5'- uGUGGGuggu--CGGGGCGGCGGaccUGUg -3'
miRNA:   3'- -UACCCuaaaauGCUCCGCCGCU---GCGu -5'
5140 5' -54.2 NC_001798.1 + 19774 0.68 0.866129
Target:  5'- -aGGGAUagggGC-AGGCGGCGgggaaGCGCAu -3'
miRNA:   3'- uaCCCUAaaa-UGcUCCGCCGC-----UGCGU- -5'
5140 5' -54.2 NC_001798.1 + 20364 0.69 0.842253
Target:  5'- -cGGGcggguuCGGGGCGGC-ACGCAg -3'
miRNA:   3'- uaCCCuaaaauGCUCCGCCGcUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.