miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 3' -56.9 NC_001798.1 + 1202 0.71 0.611273
Target:  5'- cGGCCAGCaccguccccgcgcgGCCCGCGGCCgacgcccaGCGUAUc -3'
miRNA:   3'- -CUGGUUG--------------UGGGUGCCGGac------CGCAUAc -5'
5141 3' -56.9 NC_001798.1 + 1895 0.66 0.851616
Target:  5'- cGGCCAGCAgccccaggaacUCCACGGCgCcGGCGa--- -3'
miRNA:   3'- -CUGGUUGU-----------GGGUGCCG-GaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 2508 0.66 0.874286
Target:  5'- gGGCgCGGCGgCCGCGGCggcGGCGUcgGc -3'
miRNA:   3'- -CUG-GUUGUgGGUGCCGga-CCGCAuaC- -5'
5141 3' -56.9 NC_001798.1 + 3108 0.69 0.73544
Target:  5'- cGGCCAgGCACuCCACGGCCacGCGg--- -3'
miRNA:   3'- -CUGGU-UGUG-GGUGCCGGacCGCauac -5'
5141 3' -56.9 NC_001798.1 + 3537 0.68 0.77371
Target:  5'- aGCCGAagcgGCCCGCcGCCaUGGCGUAc- -3'
miRNA:   3'- cUGGUUg---UGGGUGcCGG-ACCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 4037 0.67 0.818649
Target:  5'- cGGCCAcCGCCgCGCgGGCCcGGCGg--- -3'
miRNA:   3'- -CUGGUuGUGG-GUG-CCGGaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 4184 0.66 0.858612
Target:  5'- cGCCGAggguccCGCCCGCGGCguggucugcggcgCUGGCGg--- -3'
miRNA:   3'- cUGGUU------GUGGGUGCCG-------------GACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 4688 0.67 0.818649
Target:  5'- gGGCCAGCugCCGCGGCgaGaCGa--- -3'
miRNA:   3'- -CUGGUUGugGGUGCCGgaCcGCauac -5'
5141 3' -56.9 NC_001798.1 + 4967 0.68 0.764309
Target:  5'- cGACCucGGC-CCCGCGGCCcUGcGCGUc-- -3'
miRNA:   3'- -CUGG--UUGuGGGUGCCGG-AC-CGCAuac -5'
5141 3' -56.9 NC_001798.1 + 5367 0.66 0.874286
Target:  5'- -cCCGACGCCCGCGcGUCcgcguccgUGGCGg--- -3'
miRNA:   3'- cuGGUUGUGGGUGC-CGG--------ACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 7678 0.68 0.792126
Target:  5'- -cUCAACGCCCA-GGcCCUGGCGc--- -3'
miRNA:   3'- cuGGUUGUGGGUgCC-GGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 17872 0.7 0.665371
Target:  5'- gGGCUuGCACCCGCGGCUgaUGGCc---- -3'
miRNA:   3'- -CUGGuUGUGGGUGCCGG--ACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 23687 0.67 0.827164
Target:  5'- cGGCCGcgACGCCacgggccgcuuCACGGCCgGGCGg--- -3'
miRNA:   3'- -CUGGU--UGUGG-----------GUGCCGGaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 23803 0.66 0.881419
Target:  5'- aGCCGugGCCCGgGGCC-GGCc---- -3'
miRNA:   3'- cUGGUugUGGGUgCCGGaCCGcauac -5'
5141 3' -56.9 NC_001798.1 + 24748 0.66 0.880715
Target:  5'- cGCCGACgcgccccGCCUGCGcGCCUGGCu---- -3'
miRNA:   3'- cUGGUUG-------UGGGUGC-CGGACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 24892 0.73 0.494756
Target:  5'- cGCCGGgGCCCugGGCCcGGCGc--- -3'
miRNA:   3'- cUGGUUgUGGGugCCGGaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 25724 0.66 0.881419
Target:  5'- gGACCGGCGCCCccgacgucuCGGCgCUgGGCGc--- -3'
miRNA:   3'- -CUGGUUGUGGGu--------GCCG-GA-CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 30424 0.66 0.843654
Target:  5'- cGGCC-ACGCCCcCGGCCcGGCc---- -3'
miRNA:   3'- -CUGGuUGUGGGuGCCGGaCCGcauac -5'
5141 3' -56.9 NC_001798.1 + 30670 0.68 0.782986
Target:  5'- uGugCAACACCC-CGGU--GGCGUAc- -3'
miRNA:   3'- -CugGUUGUGGGuGCCGgaCCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 31738 0.69 0.731524
Target:  5'- aGACCGACACCCAagcacagagucugGGCCgGGCa---- -3'
miRNA:   3'- -CUGGUUGUGGGUg------------CCGGaCCGcauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.