miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 3' -56.9 NC_001798.1 + 122459 0.67 0.827164
Target:  5'- cACCAGCuguccCCCGCGGCCcagacGGCGc--- -3'
miRNA:   3'- cUGGUUGu----GGGUGCCGGa----CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 130029 0.67 0.827164
Target:  5'- cACCGGCuccCCCGCGGaCCuUGGCGcAUa -3'
miRNA:   3'- cUGGUUGu--GGGUGCC-GG-ACCGCaUAc -5'
5141 3' -56.9 NC_001798.1 + 23687 0.67 0.827164
Target:  5'- cGGCCGcgACGCCacgggccgcuuCACGGCCgGGCGg--- -3'
miRNA:   3'- -CUGGU--UGUGG-----------GUGCCGGaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 153951 0.67 0.82632
Target:  5'- aGCCAGCGCCgcaggagcgaggaCGCGGCC-GGCGc--- -3'
miRNA:   3'- cUGGUUGUGG-------------GUGCCGGaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 4037 0.67 0.818649
Target:  5'- cGGCCAcCGCCgCGCgGGCCcGGCGg--- -3'
miRNA:   3'- -CUGGUuGUGG-GUG-CCGGaCCGCauac -5'
5141 3' -56.9 NC_001798.1 + 78599 0.67 0.818649
Target:  5'- aGAUCGAgGCCgAgGGCCUGGCc---- -3'
miRNA:   3'- -CUGGUUgUGGgUgCCGGACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 4688 0.67 0.818649
Target:  5'- gGGCCAGCugCCGCGGCgaGaCGa--- -3'
miRNA:   3'- -CUGGUUGugGGUGCCGgaCcGCauac -5'
5141 3' -56.9 NC_001798.1 + 52430 0.67 0.817789
Target:  5'- cGGCCGuguacgcGCugCaCACGGcCCUGGCGa--- -3'
miRNA:   3'- -CUGGU-------UGugG-GUGCC-GGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 149982 0.67 0.809966
Target:  5'- gGGCgCGGCGCCCGCGgacGCCggGGCGa--- -3'
miRNA:   3'- -CUG-GUUGUGGGUGC---CGGa-CCGCauac -5'
5141 3' -56.9 NC_001798.1 + 117655 0.67 0.809966
Target:  5'- cGCCGGCccugcaACCCgcggggacgcGCGGCCggcGGCGUGUa -3'
miRNA:   3'- cUGGUUG------UGGG----------UGCCGGa--CCGCAUAc -5'
5141 3' -56.9 NC_001798.1 + 71082 0.67 0.801122
Target:  5'- aGCCGcgucaGCCCGCGGUC-GGCGUGc- -3'
miRNA:   3'- cUGGUug---UGGGUGCCGGaCCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 109963 0.67 0.801122
Target:  5'- uGGCaCAACagACCCGCGGCgUGGCc---- -3'
miRNA:   3'- -CUG-GUUG--UGGGUGCCGgACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 126212 0.67 0.801122
Target:  5'- cACCGACGCuCCuucaaGGCCUGGCu---- -3'
miRNA:   3'- cUGGUUGUG-GGug---CCGGACCGcauac -5'
5141 3' -56.9 NC_001798.1 + 88667 0.67 0.801122
Target:  5'- uGGCCAccAgGCCCGCGGCCgugaGGCc---- -3'
miRNA:   3'- -CUGGU--UgUGGGUGCCGGa---CCGcauac -5'
5141 3' -56.9 NC_001798.1 + 131552 0.67 0.801122
Target:  5'- cGCgAGCGCCCcgACGGCCcgGuGCGUAa- -3'
miRNA:   3'- cUGgUUGUGGG--UGCCGGa-C-CGCAUac -5'
5141 3' -56.9 NC_001798.1 + 136033 0.67 0.801122
Target:  5'- gGAUCugUACCCGCGGCCcuUGGUGc--- -3'
miRNA:   3'- -CUGGuuGUGGGUGCCGG--ACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 7678 0.68 0.792126
Target:  5'- -cUCAACGCCCA-GGcCCUGGCGc--- -3'
miRNA:   3'- cuGGUUGUGGGUgCC-GGACCGCauac -5'
5141 3' -56.9 NC_001798.1 + 81410 0.68 0.782986
Target:  5'- gGGCCuGgAUCCACGGCCuggaggagcUGGCGUccGa -3'
miRNA:   3'- -CUGGuUgUGGGUGCCGG---------ACCGCAuaC- -5'
5141 3' -56.9 NC_001798.1 + 134454 0.68 0.782986
Target:  5'- cGCCgAGCACCC-CGGCgcgcggUUGGCGUGg- -3'
miRNA:   3'- cUGG-UUGUGGGuGCCG------GACCGCAUac -5'
5141 3' -56.9 NC_001798.1 + 30670 0.68 0.782986
Target:  5'- uGugCAACACCC-CGGU--GGCGUAc- -3'
miRNA:   3'- -CugGUUGUGGGuGCCGgaCCGCAUac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.