miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 127515 1.13 0.001861
Target:  5'- gGGCAUCCGGCGCCACCUUCGCAAUCCc -3'
miRNA:   3'- -CCGUAGGCCGCGGUGGAAGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 54369 0.79 0.276438
Target:  5'- cGGCGUCCGGC-CCACCggggggccgcggCGCGGUCg -3'
miRNA:   3'- -CCGUAGGCCGcGGUGGaa----------GCGUUAGg -5'
5141 5' -55.8 NC_001798.1 + 121995 0.78 0.320351
Target:  5'- cGGCcUCCGGCGUCGCC-UCGgGGcUCCg -3'
miRNA:   3'- -CCGuAGGCCGCGGUGGaAGCgUU-AGG- -5'
5141 5' -55.8 NC_001798.1 + 43084 0.78 0.335106
Target:  5'- gGGC-UCgGGCGCCGCCgcCGC-GUCCg -3'
miRNA:   3'- -CCGuAGgCCGCGGUGGaaGCGuUAGG- -5'
5141 5' -55.8 NC_001798.1 + 4025 0.77 0.390578
Target:  5'- uGGCGUCgCGGCcgGCCACCgccgCGCGggCCc -3'
miRNA:   3'- -CCGUAG-GCCG--CGGUGGaa--GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 119452 0.76 0.407492
Target:  5'- cGUucgaCGGCGCCGCCguugUGCAAUCCg -3'
miRNA:   3'- cCGuag-GCCGCGGUGGaa--GCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 146644 0.75 0.442657
Target:  5'- gGGCAUCCGGCgGCCGgCCccaCGCccuUCCa -3'
miRNA:   3'- -CCGUAGGCCG-CGGU-GGaa-GCGuu-AGG- -5'
5141 5' -55.8 NC_001798.1 + 80794 0.75 0.46087
Target:  5'- cGGCGggCCGGaCGCCGCCcugCGCGacgucgugucGUCCg -3'
miRNA:   3'- -CCGUa-GGCC-GCGGUGGaa-GCGU----------UAGG- -5'
5141 5' -55.8 NC_001798.1 + 23752 0.75 0.46087
Target:  5'- cGGCcUCCGGCGCCuuCUaCGCGcgCUa -3'
miRNA:   3'- -CCGuAGGCCGCGGugGAaGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 147079 0.75 0.470124
Target:  5'- cGGCGgccgcccccUCCGGCGCCGCgCgUUCGCGAa-- -3'
miRNA:   3'- -CCGU---------AGGCCGCGGUG-G-AAGCGUUagg -5'
5141 5' -55.8 NC_001798.1 + 19383 0.75 0.470124
Target:  5'- cGCAUCCGGCGacCCACCccaCGCAGcgCCc -3'
miRNA:   3'- cCGUAGGCCGC--GGUGGaa-GCGUUa-GG- -5'
5141 5' -55.8 NC_001798.1 + 53287 0.75 0.479471
Target:  5'- cGGCGUuucugaCCGGCGCCGa--UCGCAgcGUCCg -3'
miRNA:   3'- -CCGUA------GGCCGCGGUggaAGCGU--UAGG- -5'
5141 5' -55.8 NC_001798.1 + 6671 0.75 0.488909
Target:  5'- cGCAggCCgGGCGCCGCCUUCGUGGa-- -3'
miRNA:   3'- cCGUa-GG-CCGCGGUGGAAGCGUUagg -5'
5141 5' -55.8 NC_001798.1 + 85370 0.74 0.526499
Target:  5'- cGGCGUCCGuCGaCACCUUCGCGcuggaccgccccuGUCUg -3'
miRNA:   3'- -CCGUAGGCcGCgGUGGAAGCGU-------------UAGG- -5'
5141 5' -55.8 NC_001798.1 + 131359 0.74 0.527478
Target:  5'- cGGCGcCCGGCGCgGCCUcggGgGAUCCc -3'
miRNA:   3'- -CCGUaGGCCGCGgUGGAag-CgUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 84112 0.74 0.536316
Target:  5'- gGGCGUCCaggccgaGGCGCC-CCUUgaCGUcGUCCa -3'
miRNA:   3'- -CCGUAGG-------CCGCGGuGGAA--GCGuUAGG- -5'
5141 5' -55.8 NC_001798.1 + 61198 0.74 0.537301
Target:  5'- uGCA-CCGGCGCgCGCCggcggUUGCAccaAUCCg -3'
miRNA:   3'- cCGUaGGCCGCG-GUGGa----AGCGU---UAGG- -5'
5141 5' -55.8 NC_001798.1 + 115765 0.74 0.547188
Target:  5'- gGGCAUCCaG-GCCACCUggcgCGUGGUCa -3'
miRNA:   3'- -CCGUAGGcCgCGGUGGAa---GCGUUAGg -5'
5141 5' -55.8 NC_001798.1 + 93270 0.73 0.567125
Target:  5'- cGGCccgcgCCGGCGCCgucggggcguACCUggCGCGcgCCg -3'
miRNA:   3'- -CCGua---GGCCGCGG----------UGGAa-GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 54814 0.73 0.577164
Target:  5'- gGGCGUCgggcuUGGCGCCACCccCGCcg-CCg -3'
miRNA:   3'- -CCGUAG-----GCCGCGGUGGaaGCGuuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.