miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5141 5' -55.8 NC_001798.1 + 20473 0.66 0.914604
Target:  5'- aGCAgagcgCCGGUG-CGCgUgCGCGAUCCc -3'
miRNA:   3'- cCGUa----GGCCGCgGUGgAaGCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 113636 0.66 0.914604
Target:  5'- cGCggCCGGCGCCGCCaugugggUgGCGGc-- -3'
miRNA:   3'- cCGuaGGCCGCGGUGGa------AgCGUUagg -5'
5141 5' -55.8 NC_001798.1 + 61819 0.66 0.90868
Target:  5'- cGCcgCCGcGgGCaCGCCUUCGCc--CCg -3'
miRNA:   3'- cCGuaGGC-CgCG-GUGGAAGCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 62555 0.66 0.90868
Target:  5'- cGGCuaugucgCCGGaCGUCGCCgccaCGUcAUCCa -3'
miRNA:   3'- -CCGua-----GGCC-GCGGUGGaa--GCGuUAGG- -5'
5141 5' -55.8 NC_001798.1 + 102540 0.66 0.90868
Target:  5'- cGCggCCGGCagGCCGCa--CGCGGUCa -3'
miRNA:   3'- cCGuaGGCCG--CGGUGgaaGCGUUAGg -5'
5141 5' -55.8 NC_001798.1 + 52371 0.66 0.90868
Target:  5'- gGGCGacaCCGcggcGCGCCGCCUgcUCGCca-CCa -3'
miRNA:   3'- -CCGUa--GGC----CGCGGUGGA--AGCGuuaGG- -5'
5141 5' -55.8 NC_001798.1 + 76045 0.67 0.902523
Target:  5'- aGGcCAUCCaGGCGCgGCUggaggacgUGCgGAUCCa -3'
miRNA:   3'- -CC-GUAGG-CCGCGgUGGaa------GCG-UUAGG- -5'
5141 5' -55.8 NC_001798.1 + 135055 0.67 0.902523
Target:  5'- aGGCggCCGGcCGCCuCCUgccCGCcuUUCg -3'
miRNA:   3'- -CCGuaGGCC-GCGGuGGAa--GCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 27937 0.67 0.902523
Target:  5'- cGGgGUcCCGGCGCCgGCCgcgccccggCGC--UCCa -3'
miRNA:   3'- -CCgUA-GGCCGCGG-UGGaa-------GCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 84606 0.67 0.902523
Target:  5'- cGGUG-CCGGUGCCccGCCgaagCGCGcgUCa -3'
miRNA:   3'- -CCGUaGGCCGCGG--UGGaa--GCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 120627 0.67 0.902523
Target:  5'- aGGaCGggCCGGuCGUCGCCggucUCGCGggCCu -3'
miRNA:   3'- -CC-GUa-GGCC-GCGGUGGa---AGCGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 104090 0.67 0.902523
Target:  5'- aGGCG-CaCGaGCGCCGCCUggCGgGcgCCc -3'
miRNA:   3'- -CCGUaG-GC-CGCGGUGGAa-GCgUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 128834 0.67 0.902523
Target:  5'- cGCGgaccCCGGCGCC-CC--CGCGGccUCCg -3'
miRNA:   3'- cCGUa---GGCCGCGGuGGaaGCGUU--AGG- -5'
5141 5' -55.8 NC_001798.1 + 132181 0.67 0.898718
Target:  5'- cGCccccCCGGaCGCCACCUUCuucggggagcuggagGCGcgCCu -3'
miRNA:   3'- cCGua--GGCC-GCGGUGGAAG---------------CGUuaGG- -5'
5141 5' -55.8 NC_001798.1 + 93755 0.67 0.896136
Target:  5'- cGGC-UgCGGgccCGCCACCccaagUUCGCGAgcgCCg -3'
miRNA:   3'- -CCGuAgGCC---GCGGUGG-----AAGCGUUa--GG- -5'
5141 5' -55.8 NC_001798.1 + 4772 0.67 0.896136
Target:  5'- cGGCAUCggcggCGGCGUCGucggccucgUCUUCGUucUCCu -3'
miRNA:   3'- -CCGUAG-----GCCGCGGU---------GGAAGCGuuAGG- -5'
5141 5' -55.8 NC_001798.1 + 77034 0.67 0.896136
Target:  5'- cGGCucuggCCGGCcugcaucCCGCCUUCGUggUg- -3'
miRNA:   3'- -CCGua---GGCCGc------GGUGGAAGCGuuAgg -5'
5141 5' -55.8 NC_001798.1 + 77400 0.67 0.896136
Target:  5'- uGGgGU-CGGCgGCCGCCgaccUgGUAGUCCa -3'
miRNA:   3'- -CCgUAgGCCG-CGGUGGa---AgCGUUAGG- -5'
5141 5' -55.8 NC_001798.1 + 104738 0.67 0.896136
Target:  5'- gGGCGUCCGcucuCGUCGCCgauuacCGCGG-CCa -3'
miRNA:   3'- -CCGUAGGCc---GCGGUGGaa----GCGUUaGG- -5'
5141 5' -55.8 NC_001798.1 + 89304 0.67 0.896136
Target:  5'- cGGCccccgGUCuCGcGCGCgACCUccUCGCGcucGUCCc -3'
miRNA:   3'- -CCG-----UAG-GC-CGCGgUGGA--AGCGU---UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.