miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 94448 0.68 0.771295
Target:  5'- aGACgGCCCCCgccGAgagcagcuucgAGgGCGACGUUGc -3'
miRNA:   3'- gUUGgCGGGGGa--CU-----------UCgUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 93861 0.7 0.663383
Target:  5'- -cGCCGCCuucucggCCCUGAAGCGCG-CGg-- -3'
miRNA:   3'- guUGGCGG-------GGGACUUCGUGCuGCagc -5'
5142 3' -57.3 NC_001798.1 + 92993 0.71 0.584016
Target:  5'- gCGGCCGCCCaCCUGgcGUuCGACGa-- -3'
miRNA:   3'- -GUUGGCGGG-GGACuuCGuGCUGCagc -5'
5142 3' -57.3 NC_001798.1 + 92901 0.7 0.684382
Target:  5'- uCAACCGCCCCCUcgcccGCcugcuguucgagGCGGuCGUCGg -3'
miRNA:   3'- -GUUGGCGGGGGAcuu--CG------------UGCU-GCAGC- -5'
5142 3' -57.3 NC_001798.1 + 91837 0.67 0.840615
Target:  5'- -cGCCGCCCCUcccAGCACGcCGUa- -3'
miRNA:   3'- guUGGCGGGGGacuUCGUGCuGCAgc -5'
5142 3' -57.3 NC_001798.1 + 91780 0.66 0.885155
Target:  5'- gCGGCCacGCCCCCUGccgaugacGCGCGggGCGUgGg -3'
miRNA:   3'- -GUUGG--CGGGGGACuu------CGUGC--UGCAgC- -5'
5142 3' -57.3 NC_001798.1 + 91631 0.68 0.771295
Target:  5'- cCGGCCGCCCggguGAGCGUGACGUCa -3'
miRNA:   3'- -GUUGGCGGGggacUUCGUGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 90992 0.66 0.878245
Target:  5'- -cACCGCCCCaCaGgcGCaaGCGACG-CGg -3'
miRNA:   3'- guUGGCGGGG-GaCuuCG--UGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 89398 0.71 0.583017
Target:  5'- cCGGCCGCuCCCCUuccccccGAGGCACGGCcgggCGc -3'
miRNA:   3'- -GUUGGCG-GGGGA-------CUUCGUGCUGca--GC- -5'
5142 3' -57.3 NC_001798.1 + 89129 0.69 0.71404
Target:  5'- cCGGuCCGCCUCCaGguGCGCGACGgccUCGg -3'
miRNA:   3'- -GUU-GGCGGGGGaCuuCGUGCUGC---AGC- -5'
5142 3' -57.3 NC_001798.1 + 88065 0.82 0.164174
Target:  5'- gGGCuCGUCCCCUGggGCGgCGGCGUCu -3'
miRNA:   3'- gUUG-GCGGGGGACuuCGU-GCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 87984 0.66 0.863793
Target:  5'- gGACgCGCCuCCCggGggGUcggcaugcgACGGCGUCu -3'
miRNA:   3'- gUUG-GCGG-GGGa-CuuCG---------UGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 87872 0.67 0.813224
Target:  5'- aGGCCGCCCCCaGcAGGUGCGAgaaguaauaguccgUGUUGa -3'
miRNA:   3'- gUUGGCGGGGGaC-UUCGUGCU--------------GCAGC- -5'
5142 3' -57.3 NC_001798.1 + 85987 0.66 0.871122
Target:  5'- aGGCCGCCgCC-GggGCGCuGGCG-Ca -3'
miRNA:   3'- gUUGGCGGgGGaCuuCGUG-CUGCaGc -5'
5142 3' -57.3 NC_001798.1 + 85001 0.68 0.762002
Target:  5'- gCGugCGCCCCgCUcGAccGGCcaugGCGACGUCc -3'
miRNA:   3'- -GUugGCGGGG-GA-CU--UCG----UGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 84609 0.68 0.789513
Target:  5'- -uGCCgguGCCCCgCcGAAGCGCG-CGUCa -3'
miRNA:   3'- guUGG---CGGGG-GaCUUCGUGCuGCAGc -5'
5142 3' -57.3 NC_001798.1 + 84216 0.66 0.878245
Target:  5'- ---gCGCCCCCcGggGCGcCGugGggcCGg -3'
miRNA:   3'- guugGCGGGGGaCuuCGU-GCugCa--GC- -5'
5142 3' -57.3 NC_001798.1 + 81784 0.69 0.74309
Target:  5'- --uCCGCCCCCcccGAGGggUGGCGUCc -3'
miRNA:   3'- guuGGCGGGGGa--CUUCguGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 80806 0.71 0.604046
Target:  5'- -cGCCGCCCU-----GCGCGACGUCGu -3'
miRNA:   3'- guUGGCGGGGgacuuCGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 78423 0.7 0.664386
Target:  5'- gGACCagaGCCCCgUGAAGaaCACGGCGUaCGc -3'
miRNA:   3'- gUUGG---CGGGGgACUUC--GUGCUGCA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.