Results 41 - 60 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5142 | 3' | -57.3 | NC_001798.1 | + | 51430 | 0.66 | 0.885155 |
Target: 5'- uGACgGCCCC--GggGCGCGGCcuuccgcgacgGUCGa -3' miRNA: 3'- gUUGgCGGGGgaCuuCGUGCUG-----------CAGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 91780 | 0.66 | 0.885155 |
Target: 5'- gCGGCCacGCCCCCUGccgaugacGCGCGggGCGUgGg -3' miRNA: 3'- -GUUGG--CGGGGGACuu------CGUGC--UGCAgC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 135594 | 0.66 | 0.885155 |
Target: 5'- --cUCGCCCCCUcccuGGCGCcagagGGCGUCu -3' miRNA: 3'- guuGGCGGGGGAcu--UCGUG-----CUGCAGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 2992 | 0.66 | 0.885155 |
Target: 5'- cCGGcCCGCgggCCCCgggcgcgGggGCGCGGCGggcCGg -3' miRNA: 3'- -GUU-GGCG---GGGGa------CuuCGUGCUGCa--GC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 15830 | 0.66 | 0.885155 |
Target: 5'- -cGCCGCCCgguUCggGggGCcCGaACGUCGg -3' miRNA: 3'- guUGGCGGG---GGa-CuuCGuGC-UGCAGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 48086 | 0.66 | 0.878245 |
Target: 5'- -cACCGCCCCaccGAGCcccACGGCGcCGu -3' miRNA: 3'- guUGGCGGGGgacUUCG---UGCUGCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 31202 | 0.66 | 0.877542 |
Target: 5'- cCGACCggcGCCCCCUGGcgccccgcggagcAGCagcaGCGGCGgCGc -3' miRNA: 3'- -GUUGG---CGGGGGACU-------------UCG----UGCUGCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 91837 | 0.67 | 0.840615 |
Target: 5'- -cGCCGCCCCUcccAGCACGcCGUa- -3' miRNA: 3'- guUGGCGGGGGacuUCGUGCuGCAgc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 110916 | 0.67 | 0.840615 |
Target: 5'- cCAGCCGCCCCCgccGGCcCG-CGgUCa -3' miRNA: 3'- -GUUGGCGGGGGacuUCGuGCuGC-AGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 154565 | 0.67 | 0.840615 |
Target: 5'- --cCCGCCCCCgcgcGGCAgGACGg-- -3' miRNA: 3'- guuGGCGGGGGacu-UCGUgCUGCagc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 9032 | 0.67 | 0.848533 |
Target: 5'- -cACCGCCCCCcGcagccagcGCACGGCGa-- -3' miRNA: 3'- guUGGCGGGGGaCuu------CGUGCUGCagc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 31125 | 0.67 | 0.848533 |
Target: 5'- --cCCGCCCCCcGAagAGCGCcccGGCG-CGg -3' miRNA: 3'- guuGGCGGGGGaCU--UCGUG---CUGCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 72361 | 0.67 | 0.848533 |
Target: 5'- -cGCCGaCCCCCUGGuccgccAGCugGAgGaCGc -3' miRNA: 3'- guUGGC-GGGGGACU------UCGugCUgCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 24175 | 0.66 | 0.856261 |
Target: 5'- gGGCCGCUUcggcuggggCCUGgcGCACGugG-CGg -3' miRNA: 3'- gUUGGCGGG---------GGACuuCGUGCugCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 24474 | 0.66 | 0.863793 |
Target: 5'- -uGCuCGCCgCCCUGggGCGCcugaGCGcCGc -3' miRNA: 3'- guUG-GCGG-GGGACuuCGUGc---UGCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 87984 | 0.66 | 0.863793 |
Target: 5'- gGACgCGCCuCCCggGggGUcggcaugcgACGGCGUCu -3' miRNA: 3'- gUUG-GCGG-GGGa-CuuCG---------UGCUGCAGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 23863 | 0.66 | 0.866749 |
Target: 5'- aCAGCCGCCCCggccuCUGggGgGCGcccgaggcggaggagGCG-CGg -3' miRNA: 3'- -GUUGGCGGGG-----GACuuCgUGC---------------UGCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 51119 | 0.66 | 0.868215 |
Target: 5'- gAGCCGCCCCCgcgccgucgccggGAGGCcCG-CGgUCa -3' miRNA: 3'- gUUGGCGGGGGa------------CUUCGuGCuGC-AGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 52849 | 0.66 | 0.871122 |
Target: 5'- --cCCGcCCCCCUGAAuaGCGA-GUCc -3' miRNA: 3'- guuGGC-GGGGGACUUcgUGCUgCAGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 85987 | 0.66 | 0.871122 |
Target: 5'- aGGCCGCCgCC-GggGCGCuGGCG-Ca -3' miRNA: 3'- gUUGGCGGgGGaCuuCGUG-CUGCaGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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