Results 81 - 100 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5142 | 3' | -57.3 | NC_001798.1 | + | 87872 | 0.67 | 0.813224 |
Target: 5'- aGGCCGCCCCCaGcAGGUGCGAgaaguaauaguccgUGUUGa -3' miRNA: 3'- gUUGGCGGGGGaC-UUCGUGCU--------------GCAGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 106279 | 0.67 | 0.807181 |
Target: 5'- aCGACCuuguCCCCCgGAGGCGCGAgCGa-- -3' miRNA: 3'- -GUUGGc---GGGGGaCUUCGUGCU-GCagc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 26203 | 0.67 | 0.807181 |
Target: 5'- gGGCCGCCgCCUcGGGCGCgGGCGaCGc -3' miRNA: 3'- gUUGGCGGgGGAcUUCGUG-CUGCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 7787 | 0.68 | 0.79842 |
Target: 5'- -cACCGCCCCCgcuggcgGGAGC-CaGgGUCGg -3' miRNA: 3'- guUGGCGGGGGa------CUUCGuGcUgCAGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 137765 | 0.68 | 0.79842 |
Target: 5'- cCAGCUcguGCUCCCaGAGGCGCGACa--- -3' miRNA: 3'- -GUUGG---CGGGGGaCUUCGUGCUGcagc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 24981 | 0.68 | 0.79842 |
Target: 5'- gAGCCugcGCCCCCUGcuGGC-CGAcacCGUCGc -3' miRNA: 3'- gUUGG---CGGGGGACu-UCGuGCU---GCAGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 84609 | 0.68 | 0.789513 |
Target: 5'- -uGCCgguGCCCCgCcGAAGCGCG-CGUCa -3' miRNA: 3'- guUGG---CGGGG-GaCUUCGUGCuGCAGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 141419 | 0.67 | 0.81579 |
Target: 5'- aGAgCGCCCCCUucAGCACcuACGUgGa -3' miRNA: 3'- gUUgGCGGGGGAcuUCGUGc-UGCAgC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 9629 | 0.67 | 0.824236 |
Target: 5'- gGGCCGCCCCCagcaccgccccGAGGCGCaGCGg-- -3' miRNA: 3'- gUUGGCGGGGGa----------CUUCGUGcUGCagc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 101957 | 0.67 | 0.824236 |
Target: 5'- gGACCGCCCCggauagagGAGGCcccggggggGCGAUGUgCGg -3' miRNA: 3'- gUUGGCGGGGga------CUUCG---------UGCUGCA-GC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 154565 | 0.67 | 0.840615 |
Target: 5'- --cCCGCCCCCgcgcGGCAgGACGg-- -3' miRNA: 3'- guuGGCGGGGGacu-UCGUgCUGCagc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 110916 | 0.67 | 0.840615 |
Target: 5'- cCAGCCGCCCCCgccGGCcCG-CGgUCa -3' miRNA: 3'- -GUUGGCGGGGGacuUCGuGCuGC-AGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 91837 | 0.67 | 0.840615 |
Target: 5'- -cGCCGCCCCUcccAGCACGcCGUa- -3' miRNA: 3'- guUGGCGGGGGacuUCGUGCuGCAgc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 58109 | 0.67 | 0.840615 |
Target: 5'- gCGGCCGCCCa---GGGCcCGGCGUCu -3' miRNA: 3'- -GUUGGCGGGggacUUCGuGCUGCAGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 2105 | 0.67 | 0.840615 |
Target: 5'- --cCCGCCCCC---GGCGCGGCccgCGg -3' miRNA: 3'- guuGGCGGGGGacuUCGUGCUGca-GC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 227 | 0.67 | 0.840615 |
Target: 5'- --cCCGCCCCCgcgcGGCAgGACGg-- -3' miRNA: 3'- guuGGCGGGGGacu-UCGUgCUGCagc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 18597 | 0.67 | 0.840615 |
Target: 5'- gCAGCC-CCCCCgGGuccGCGCGcCGUCc -3' miRNA: 3'- -GUUGGcGGGGGaCUu--CGUGCuGCAGc -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 26308 | 0.67 | 0.831694 |
Target: 5'- -cGCCGCUgcggCCCgucuacguggcgcUGggGCGCGACGcCGu -3' miRNA: 3'- guUGGCGG----GGG-------------ACuuCGUGCUGCaGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 5575 | 0.67 | 0.824236 |
Target: 5'- -cGCCGgCCCCaaaGggGCcgGCGAgGUCGc -3' miRNA: 3'- guUGGCgGGGGa--CuuCG--UGCUgCAGC- -5' |
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5142 | 3' | -57.3 | NC_001798.1 | + | 120655 | 0.67 | 0.824236 |
Target: 5'- gGGCCuGCCCCCcgaUGAucuccuGCAUGAaggaGUCGg -3' miRNA: 3'- gUUGG-CGGGGG---ACUu-----CGUGCUg---CAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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