miRNA display CGI


Results 101 - 118 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 3' -57.3 NC_001798.1 + 143018 0.68 0.77498
Target:  5'- aUAACCGCCCgcagcugcucgcgcaCCU---GCGCGGCGUUGg -3'
miRNA:   3'- -GUUGGCGGG---------------GGAcuuCGUGCUGCAGC- -5'
5142 3' -57.3 NC_001798.1 + 135288 0.68 0.771295
Target:  5'- gCGGCCGCCCCCUcGGAGccCugGGCc-CGg -3'
miRNA:   3'- -GUUGGCGGGGGA-CUUC--GugCUGcaGC- -5'
5142 3' -57.3 NC_001798.1 + 7787 0.68 0.79842
Target:  5'- -cACCGCCCCCgcuggcgGGAGC-CaGgGUCGg -3'
miRNA:   3'- guUGGCGGGGGa------CUUCGuGcUgCAGC- -5'
5142 3' -57.3 NC_001798.1 + 26203 0.67 0.807181
Target:  5'- gGGCCGCCgCCUcGGGCGCgGGCGaCGc -3'
miRNA:   3'- gUUGGCGGgGGAcUUCGUG-CUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 106279 0.67 0.807181
Target:  5'- aCGACCuuguCCCCCgGAGGCGCGAgCGa-- -3'
miRNA:   3'- -GUUGGc---GGGGGaCUUCGUGCU-GCagc -5'
5142 3' -57.3 NC_001798.1 + 227 0.67 0.840615
Target:  5'- --cCCGCCCCCgcgcGGCAgGACGg-- -3'
miRNA:   3'- guuGGCGGGGGacu-UCGUgCUGCagc -5'
5142 3' -57.3 NC_001798.1 + 18597 0.67 0.840615
Target:  5'- gCAGCC-CCCCCgGGuccGCGCGcCGUCc -3'
miRNA:   3'- -GUUGGcGGGGGaCUu--CGUGCuGCAGc -5'
5142 3' -57.3 NC_001798.1 + 26308 0.67 0.831694
Target:  5'- -cGCCGCUgcggCCCgucuacguggcgcUGggGCGCGACGcCGu -3'
miRNA:   3'- guUGGCGG----GGG-------------ACuuCGUGCUGCaGC- -5'
5142 3' -57.3 NC_001798.1 + 5575 0.67 0.824236
Target:  5'- -cGCCGgCCCCaaaGggGCcgGCGAgGUCGc -3'
miRNA:   3'- guUGGCgGGGGa--CuuCG--UGCUgCAGC- -5'
5142 3' -57.3 NC_001798.1 + 120655 0.67 0.824236
Target:  5'- gGGCCuGCCCCCcgaUGAucuccuGCAUGAaggaGUCGg -3'
miRNA:   3'- gUUGG-CGGGGG---ACUu-----CGUGCUg---CAGC- -5'
5142 3' -57.3 NC_001798.1 + 101957 0.67 0.824236
Target:  5'- gGACCGCCCCggauagagGAGGCcccggggggGCGAUGUgCGg -3'
miRNA:   3'- gUUGGCGGGGga------CUUCG---------UGCUGCA-GC- -5'
5142 3' -57.3 NC_001798.1 + 9629 0.67 0.824236
Target:  5'- gGGCCGCCCCCagcaccgccccGAGGCGCaGCGg-- -3'
miRNA:   3'- gUUGGCGGGGGa----------CUUCGUGcUGCagc -5'
5142 3' -57.3 NC_001798.1 + 141419 0.67 0.81579
Target:  5'- aGAgCGCCCCCUucAGCACcuACGUgGa -3'
miRNA:   3'- gUUgGCGGGGGAcuUCGUGc-UGCAgC- -5'
5142 3' -57.3 NC_001798.1 + 52076 0.67 0.81579
Target:  5'- uGGCCGCCCgCUacgcGggGCGCauGACGUa- -3'
miRNA:   3'- gUUGGCGGGgGA----CuuCGUG--CUGCAgc -5'
5142 3' -57.3 NC_001798.1 + 34560 0.67 0.81579
Target:  5'- gAGCCuggguCCCCCggcgGAcggcucacgcGGCGCGGCGUCu -3'
miRNA:   3'- gUUGGc----GGGGGa---CU----------UCGUGCUGCAGc -5'
5142 3' -57.3 NC_001798.1 + 150071 0.67 0.81579
Target:  5'- uGGCCcccaCCCCCUGggGgGCGAgGggCGa -3'
miRNA:   3'- gUUGGc---GGGGGACuuCgUGCUgCa-GC- -5'
5142 3' -57.3 NC_001798.1 + 87872 0.67 0.813224
Target:  5'- aGGCCGCCCCCaGcAGGUGCGAgaaguaauaguccgUGUUGa -3'
miRNA:   3'- gUUGGCGGGGGaC-UUCGUGCU--------------GCAGC- -5'
5142 3' -57.3 NC_001798.1 + 91631 0.68 0.771295
Target:  5'- cCGGCCGCCCggguGAGCGUGACGUCa -3'
miRNA:   3'- -GUUGGCGGGggacUUCGUGCUGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.