miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5142 5' -57.7 NC_001798.1 + 43533 0.66 0.851849
Target:  5'- -cCGcGUCUCccgccaggGCGguuuCCCUGGGGguGACg -3'
miRNA:   3'- caGC-UAGAGa-------UGC----GGGACCCCguCUG- -5'
5142 5' -57.7 NC_001798.1 + 38776 0.66 0.851065
Target:  5'- aGUCGAUCUCcgacACGCCgcgcucgacgcggUUGGcgaGGCGGGCc -3'
miRNA:   3'- -CAGCUAGAGa---UGCGG-------------GACC---CCGUCUG- -5'
5142 5' -57.7 NC_001798.1 + 80780 0.66 0.843927
Target:  5'- uUCGA-CUC-GCGCCCcgGcGGGcCGGACg -3'
miRNA:   3'- cAGCUaGAGaUGCGGGa-C-CCC-GUCUG- -5'
5142 5' -57.7 NC_001798.1 + 70803 0.66 0.810411
Target:  5'- -cCGGU-UCUugGCCCUGGucagcaauuGGguGACg -3'
miRNA:   3'- caGCUAgAGAugCGGGACC---------CCguCUG- -5'
5142 5' -57.7 NC_001798.1 + 43452 0.66 0.810411
Target:  5'- -aCGAg-UCUGCGaCCCcgcaguacgcgGGGGCGGGCg -3'
miRNA:   3'- caGCUagAGAUGC-GGGa----------CCCCGUCUG- -5'
5142 5' -57.7 NC_001798.1 + 27035 0.67 0.801613
Target:  5'- gGUCGGgcgggcggcacgUCUCccGCGCCCgcggGGGGUcugGGGCu -3'
miRNA:   3'- -CAGCU------------AGAGa-UGCGGGa---CCCCG---UCUG- -5'
5142 5' -57.7 NC_001798.1 + 135232 0.67 0.801613
Target:  5'- -cCGGg--CUGCcggaaGCCCgGGGGCGGGCg -3'
miRNA:   3'- caGCUagaGAUG-----CGGGaCCCCGUCUG- -5'
5142 5' -57.7 NC_001798.1 + 102822 0.67 0.78357
Target:  5'- -cCGcgCUCcgGCGCa--GGGGCAGACu -3'
miRNA:   3'- caGCuaGAGa-UGCGggaCCCCGUCUG- -5'
5142 5' -57.7 NC_001798.1 + 13242 0.67 0.78357
Target:  5'- -gCGGgg-CUGCGUUCggaUGGGGCAGACc -3'
miRNA:   3'- caGCUagaGAUGCGGG---ACCCCGUCUG- -5'
5142 5' -57.7 NC_001798.1 + 44607 0.67 0.77155
Target:  5'- cUCGAacCUCUccuguucggugggcGCGCCCgUGGGGCcauuGGGCg -3'
miRNA:   3'- cAGCUa-GAGA--------------UGCGGG-ACCCCG----UCUG- -5'
5142 5' -57.7 NC_001798.1 + 111814 0.67 0.75552
Target:  5'- -cCGGUCgcggGCGUCCaGGGGCuGGCg -3'
miRNA:   3'- caGCUAGaga-UGCGGGaCCCCGuCUG- -5'
5142 5' -57.7 NC_001798.1 + 24467 0.68 0.726502
Target:  5'- -gCGGgggugCUCgcCGCCCUGGGGCGc-- -3'
miRNA:   3'- caGCUa----GAGauGCGGGACCCCGUcug -5'
5142 5' -57.7 NC_001798.1 + 115968 0.68 0.716656
Target:  5'- -aCGAgcacgugUUCUGCGCCCUGGcgcGGCucguGACu -3'
miRNA:   3'- caGCUa------GAGAUGCGGGACC---CCGu---CUG- -5'
5142 5' -57.7 NC_001798.1 + 79484 0.68 0.706739
Target:  5'- gGUCGAcccgcagCUgCUGCGCCgCcGGGGCgAGGCg -3'
miRNA:   3'- -CAGCUa------GA-GAUGCGG-GaCCCCG-UCUG- -5'
5142 5' -57.7 NC_001798.1 + 113505 0.69 0.676648
Target:  5'- -gCGGccCUgUGCGCCCUGGuGGCGGcCg -3'
miRNA:   3'- caGCUa-GAgAUGCGGGACC-CCGUCuG- -5'
5142 5' -57.7 NC_001798.1 + 153050 0.69 0.666535
Target:  5'- -gCGGUUggccgGCGCcgcccCCUGGGGCGGGCg -3'
miRNA:   3'- caGCUAGaga--UGCG-----GGACCCCGUCUG- -5'
5142 5' -57.7 NC_001798.1 + 77381 0.7 0.625887
Target:  5'- aUCGAcgagCUC-ACGaCCCUGGGGUcGGCg -3'
miRNA:   3'- cAGCUa---GAGaUGC-GGGACCCCGuCUG- -5'
5142 5' -57.7 NC_001798.1 + 39865 0.7 0.625887
Target:  5'- cGUCGAggcUUCgggggugccgGCGUCCUcGGGGCGGGCc -3'
miRNA:   3'- -CAGCUa--GAGa---------UGCGGGA-CCCCGUCUG- -5'
5142 5' -57.7 NC_001798.1 + 121536 0.7 0.615717
Target:  5'- -aCGGUCgcggcgCUGCGCCUggcgUGGGGCccguGGGCg -3'
miRNA:   3'- caGCUAGa-----GAUGCGGG----ACCCCG----UCUG- -5'
5142 5' -57.7 NC_001798.1 + 97826 0.72 0.487029
Target:  5'- -gCGcgCuUCUGCGCCCUGacGGCGGGCg -3'
miRNA:   3'- caGCuaG-AGAUGCGGGACc-CCGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.