miRNA display CGI


Results 61 - 80 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 131133 0.69 0.999343
Target:  5'- aGCAGGcucugcguGUCCAAccgGAGGGGGAcggcuacaccccCGCGCAc -3'
miRNA:   3'- -CGUUU--------UAGGUU---UUUUCCCU------------GCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 2998 0.69 0.999184
Target:  5'- cGCGGGccCCGGGcgcGGGGGCGCgGCGGg -3'
miRNA:   3'- -CGUUUuaGGUUUuu-UCCCUGCG-CGUC- -5'
5145 3' -45.5 NC_001798.1 + 153744 0.69 0.999184
Target:  5'- cGCAgccguAGcgCCAGguggggcgGAAGGGGGCGCuGCGGc -3'
miRNA:   3'- -CGU-----UUuaGGUU--------UUUUCCCUGCG-CGUC- -5'
5145 3' -45.5 NC_001798.1 + 136630 0.69 0.999184
Target:  5'- cGCAGAGcUCUGc---GGGGugGCGCAa -3'
miRNA:   3'- -CGUUUU-AGGUuuuuUCCCugCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 2258 0.69 0.999583
Target:  5'- cGCGccg-CCGGGGGGcGGGGCGgCGCAGc -3'
miRNA:   3'- -CGUuuuaGGUUUUUU-CCCUGC-GCGUC- -5'
5145 3' -45.5 NC_001798.1 + 16864 0.69 0.999583
Target:  5'- gGCAAGGUgCCAAAAacaccaaagcccGAGGGcCGCGUc- -3'
miRNA:   3'- -CGUUUUA-GGUUUU------------UUCCCuGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 34500 0.69 0.999671
Target:  5'- cGCGGcGUUCG----AGGGGCGCGCu- -3'
miRNA:   3'- -CGUUuUAGGUuuuuUCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 76428 0.69 0.999671
Target:  5'- cGCAAGccCCuGGAAGAGcuGGCGCGCAGc -3'
miRNA:   3'- -CGUUUuaGG-UUUUUUCc-CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 96087 0.69 0.999583
Target:  5'- cGCAucAGUCCGcgc--GGGGCGCGCc- -3'
miRNA:   3'- -CGUu-UUAGGUuuuuuCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 145363 0.69 0.999671
Target:  5'- cGCAcacgugauAGGUCUugGGAAcccGAGGGGCGaCGCGGg -3'
miRNA:   3'- -CGU--------UUUAGG--UUUU---UUCCCUGC-GCGUC- -5'
5145 3' -45.5 NC_001798.1 + 150029 0.69 0.999583
Target:  5'- cGCccGAGUCCGAGuccGGGGCccgGCGCGGc -3'
miRNA:   3'- -CGu-UUUAGGUUUuuuCCCUG---CGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 136805 0.69 0.999583
Target:  5'- aGCGGAcgCgCucGAAGGGaGACGCGUGGc -3'
miRNA:   3'- -CGUUUuaG-GuuUUUUCC-CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 58992 0.69 0.999583
Target:  5'- gGCGAAcgCgG---GGGGGGCGCGgAGg -3'
miRNA:   3'- -CGUUUuaGgUuuuUUCCCUGCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 46001 0.7 0.998765
Target:  5'- -gGGGAUCCAGGGGAGGG-CGUGgGu -3'
miRNA:   3'- cgUUUUAGGUUUUUUCCCuGCGCgUc -5'
5145 3' -45.5 NC_001798.1 + 97603 0.7 0.998765
Target:  5'- cGCAGGggCCGGAGAGcuGGGGCGacaucgcgaCGCGGg -3'
miRNA:   3'- -CGUUUuaGGUUUUUU--CCCUGC---------GCGUC- -5'
5145 3' -45.5 NC_001798.1 + 4355 0.7 0.998765
Target:  5'- cCGAGcgCCGGc-GGGGGGCGCGCc- -3'
miRNA:   3'- cGUUUuaGGUUuuUUCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 50663 0.7 0.998765
Target:  5'- uGCuGGGGUCCGcguauAAAGGcaGGCGCGCGGg -3'
miRNA:   3'- -CG-UUUUAGGUuu---UUUCC--CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 120395 0.7 0.998765
Target:  5'- gGCGAuGUCCGc--GGGGGccgaucccgugaGCGCGCGGa -3'
miRNA:   3'- -CGUUuUAGGUuuuUUCCC------------UGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 83622 0.7 0.998993
Target:  5'- cGUAAGAaucgggCCGGAggcgggagcgGAGGGGAUGUGCGGc -3'
miRNA:   3'- -CGUUUUa-----GGUUU----------UUUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 39394 0.7 0.998765
Target:  5'- gGCAGAGggcgccuuucgcUCCGGGAccGGGGCGCGg-- -3'
miRNA:   3'- -CGUUUU------------AGGUUUUuuCCCUGCGCguc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.