miRNA display CGI


Results 81 - 100 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 145784 0.7 0.998494
Target:  5'- cCGGGGUCCAcac-AGGaGCGCGCGGg -3'
miRNA:   3'- cGUUUUAGGUuuuuUCCcUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 17246 0.7 0.998494
Target:  5'- cGCGGGG-CCGAGAAcaaGGACGCGguGu -3'
miRNA:   3'- -CGUUUUaGGUUUUUuc-CCUGCGCguC- -5'
5145 3' -45.5 NC_001798.1 + 39394 0.7 0.998765
Target:  5'- gGCAGAGggcgccuuucgcUCCGGGAccGGGGCGCGg-- -3'
miRNA:   3'- -CGUUUU------------AGGUUUUuuCCCUGCGCguc -5'
5145 3' -45.5 NC_001798.1 + 88045 0.7 0.998993
Target:  5'- gGCAGGG-CCGcuGGGGGGGCGgGCu- -3'
miRNA:   3'- -CGUUUUaGGUuuUUUCCCUGCgCGuc -5'
5145 3' -45.5 NC_001798.1 + 83622 0.7 0.998993
Target:  5'- cGUAAGAaucgggCCGGAggcgggagcgGAGGGGAUGUGCGGc -3'
miRNA:   3'- -CGUUUUa-----GGUUU----------UUUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 120395 0.7 0.998765
Target:  5'- gGCGAuGUCCGc--GGGGGccgaucccgugaGCGCGCGGa -3'
miRNA:   3'- -CGUUuUAGGUuuuUUCCC------------UGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 50663 0.7 0.998765
Target:  5'- uGCuGGGGUCCGcguauAAAGGcaGGCGCGCGGg -3'
miRNA:   3'- -CG-UUUUAGGUuu---UUUCC--CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 4355 0.7 0.998765
Target:  5'- cCGAGcgCCGGc-GGGGGGCGCGCc- -3'
miRNA:   3'- cGUUUuaGGUUuuUUCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 97603 0.7 0.998765
Target:  5'- cGCAGGggCCGGAGAGcuGGGGCGacaucgcgaCGCGGg -3'
miRNA:   3'- -CGUUUuaGGUUUUUU--CCCUGC---------GCGUC- -5'
5145 3' -45.5 NC_001798.1 + 46001 0.7 0.998765
Target:  5'- -gGGGAUCCAGGGGAGGG-CGUGgGu -3'
miRNA:   3'- cgUUUUAGGUUUUUUCCCuGCGCgUc -5'
5145 3' -45.5 NC_001798.1 + 36613 0.71 0.995604
Target:  5'- nGCGg---CCGGGc-GGGGGCGCGCGGc -3'
miRNA:   3'- -CGUuuuaGGUUUuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 40503 0.71 0.996274
Target:  5'- uGCuggg-CCGGGGGAGGGGCaaGCAGa -3'
miRNA:   3'- -CGuuuuaGGUUUUUUCCCUGcgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 128414 0.71 0.996577
Target:  5'- gGCGGGGccugacgaccgccUCCAcgcugcgguGGGGCGCGCAGg -3'
miRNA:   3'- -CGUUUU-------------AGGUuuuuu----CCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 41736 0.71 0.996858
Target:  5'- gGCAAAGcacugCUGAcacAGGGACGCGCAu -3'
miRNA:   3'- -CGUUUUa----GGUUuuuUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 5234 0.71 0.996858
Target:  5'- gGCugauauAGUCCuc----GGGGCGCGCGGg -3'
miRNA:   3'- -CGuu----UUAGGuuuuuuCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 86136 0.71 0.996858
Target:  5'- aGC-GAGUCCuGGGAAgcgcaccgcGGGGCGCGCAu -3'
miRNA:   3'- -CGuUUUAGGuUUUUU---------CCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 106489 0.71 0.996858
Target:  5'- cCGAGGUCCAcuucgcauAuuAAGGuGACGCGCGu -3'
miRNA:   3'- cGUUUUAGGU--------UuuUUCC-CUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 153667 0.71 0.996858
Target:  5'- cGCGGcgcGUCCGcgGGcGGGGACGCGgGGg -3'
miRNA:   3'- -CGUUu--UAGGUuuUU-UCCCUGCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 117664 0.72 0.994838
Target:  5'- uGCAAc--CCGc---GGGGACGCGCGGc -3'
miRNA:   3'- -CGUUuuaGGUuuuuUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 79136 0.72 0.994838
Target:  5'- cGCGGAggCCGugGAGGAGcuGGGCGCGCGc -3'
miRNA:   3'- -CGUUUuaGGU--UUUUUC--CCUGCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.