Results 101 - 120 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5145 | 3' | -45.5 | NC_001798.1 | + | 142156 | 0.72 | 0.992983 |
Target: 5'- uGCAcguGUuuGAGucAGGGACGCGCGc -3' miRNA: 3'- -CGUuu-UAggUUUuuUCCCUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 147496 | 0.72 | 0.992983 |
Target: 5'- cCAGGcUCCGGGGGGGGGGgGCGCc- -3' miRNA: 3'- cGUUUuAGGUUUUUUCCCUgCGCGuc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 79136 | 0.72 | 0.994838 |
Target: 5'- cGCGGAggCCGugGAGGAGcuGGGCGCGCGc -3' miRNA: 3'- -CGUUUuaGGU--UUUUUC--CCUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 117664 | 0.72 | 0.994838 |
Target: 5'- uGCAAc--CCGc---GGGGACGCGCGGc -3' miRNA: 3'- -CGUUuuaGGUuuuuUCCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 13161 | 0.72 | 0.994838 |
Target: 5'- cGCGGucUCgAAGGcGGGGGCGUGCAu -3' miRNA: 3'- -CGUUuuAGgUUUUuUCCCUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 30939 | 0.73 | 0.984104 |
Target: 5'- gGCGGGggUCGGGcgGGGGGCGgGCGGg -3' miRNA: 3'- -CGUUUuaGGUUUuuUCCCUGCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 150439 | 0.73 | 0.984104 |
Target: 5'- gGCGGAcUCCGGAcgcgcggggcGAcggccgcgcGGGGGCGCGCGGc -3' miRNA: 3'- -CGUUUuAGGUUU----------UU---------UCCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 20384 | 0.73 | 0.98488 |
Target: 5'- cGCAGGAUCCGAAAGAGcugguuGACGCacuggcguauguaauGCAGa -3' miRNA: 3'- -CGUUUUAGGUUUUUUCc-----CUGCG---------------CGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 52220 | 0.73 | 0.988796 |
Target: 5'- aGCAGAcgGUCCAGugGcucucgguggucguGGGGGCGCGCc- -3' miRNA: 3'- -CGUUU--UAGGUUuuU--------------UCCCUGCGCGuc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 88738 | 0.73 | 0.989243 |
Target: 5'- cGCAugGAGUaCGGAccGGGGGCGCGCAu -3' miRNA: 3'- -CGU--UUUAgGUUUuuUCCCUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 40143 | 0.74 | 0.979763 |
Target: 5'- gGCGGGuGUCCuccGAGGGGGCGCGUg- -3' miRNA: 3'- -CGUUU-UAGGuuuUUUCCCUGCGCGuc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 13037 | 0.74 | 0.979763 |
Target: 5'- gGCAcgcugCCG---GGGGGAUGCGCAGg -3' miRNA: 3'- -CGUuuua-GGUuuuUUCCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 87370 | 0.74 | 0.974597 |
Target: 5'- uGCAcacGAUCCugcgcGGAGGGGGGGCGUGCGa -3' miRNA: 3'- -CGUu--UUAGG-----UUUUUUCCCUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 146685 | 0.74 | 0.971681 |
Target: 5'- ------cCCAcguuGGGGGGGGGCGCGCAGc -3' miRNA: 3'- cguuuuaGGU----UUUUUCCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 49253 | 0.75 | 0.965141 |
Target: 5'- aGCGAcguGAUCgAcuGGGGGGAUGCGCAc -3' miRNA: 3'- -CGUU---UUAGgUuuUUUCCCUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 36547 | 0.75 | 0.968531 |
Target: 5'- cGCGGcggCCGGGc-GGGGGCGCGCGGc -3' miRNA: 3'- -CGUUuuaGGUUUuuUCCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 36589 | 0.75 | 0.968531 |
Target: 5'- cGCGGcggCCGGGc-GGGGGCGCGCGGc -3' miRNA: 3'- -CGUUuuaGGUUUuuUCCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 36504 | 0.76 | 0.953451 |
Target: 5'- cGCGGGcggCCGGGc-GGGGGCGCGCGGc -3' miRNA: 3'- -CGUUUua-GGUUUuuUCCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 153022 | 0.76 | 0.944337 |
Target: 5'- gGCGGAGUCCGGGcccgcgcGGcGGCGCGCGGu -3' miRNA: 3'- -CGUUUUAGGUUUuuu----CC-CUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 17966 | 0.76 | 0.944337 |
Target: 5'- cGC-AGGUCCGGAcgucgGGGGGGGCuGCGCGGc -3' miRNA: 3'- -CGuUUUAGGUUU-----UUUCCCUG-CGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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