miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 90138 0.7 0.998494
Target:  5'- cGCAGGAUCCGAgcGAAaacaGGaGGAUGUGCu- -3'
miRNA:   3'- -CGUUUUAGGUU--UUU----UC-CCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 46001 0.7 0.998765
Target:  5'- -gGGGAUCCAGGGGAGGG-CGUGgGu -3'
miRNA:   3'- cgUUUUAGGUUUUUUCCCuGCGCgUc -5'
5145 3' -45.5 NC_001798.1 + 135235 0.7 0.997801
Target:  5'- gGCug---CCGGAAGcccGGGGGCGgGCGGg -3'
miRNA:   3'- -CGuuuuaGGUUUUU---UCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 50663 0.7 0.998765
Target:  5'- uGCuGGGGUCCGcguauAAAGGcaGGCGCGCGGg -3'
miRNA:   3'- -CG-UUUUAGGUuu---UUUCC--CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 88045 0.7 0.998993
Target:  5'- gGCAGGG-CCGcuGGGGGGGCGgGCu- -3'
miRNA:   3'- -CGUUUUaGGUuuUUUCCCUGCgCGuc -5'
5145 3' -45.5 NC_001798.1 + 49631 0.7 0.998494
Target:  5'- cGCGAGAUCCuau---GGGcCGCGUAc -3'
miRNA:   3'- -CGUUUUAGGuuuuuuCCCuGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 22346 0.7 0.998175
Target:  5'- cGCGGGcgUCGGGGcGGGGcCGCGCAu -3'
miRNA:   3'- -CGUUUuaGGUUUUuUCCCuGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 40182 0.7 0.997801
Target:  5'- gGCcGGGUCCGAAucGAGGagcggcaccGACGCGCAa -3'
miRNA:   3'- -CGuUUUAGGUUUu-UUCC---------CUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 57547 0.7 0.997801
Target:  5'- gGCGGAugcguUCCGc---GGGGACGCGgAGg -3'
miRNA:   3'- -CGUUUu----AGGUuuuuUCCCUGCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 39394 0.7 0.998765
Target:  5'- gGCAGAGggcgccuuucgcUCCGGGAccGGGGCGCGg-- -3'
miRNA:   3'- -CGUUUU------------AGGUUUUuuCCCUGCGCguc -5'
5145 3' -45.5 NC_001798.1 + 120395 0.7 0.998765
Target:  5'- gGCGAuGUCCGc--GGGGGccgaucccgugaGCGCGCGGa -3'
miRNA:   3'- -CGUUuUAGGUuuuUUCCC------------UGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 96087 0.69 0.999583
Target:  5'- cGCAucAGUCCGcgc--GGGGCGCGCc- -3'
miRNA:   3'- -CGUu-UUAGGUuuuuuCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 76428 0.69 0.999671
Target:  5'- cGCAAGccCCuGGAAGAGcuGGCGCGCAGc -3'
miRNA:   3'- -CGUUUuaGG-UUUUUUCc-CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 34500 0.69 0.999671
Target:  5'- cGCGGcGUUCG----AGGGGCGCGCu- -3'
miRNA:   3'- -CGUUuUAGGUuuuuUCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 2998 0.69 0.999184
Target:  5'- cGCGGGccCCGGGcgcGGGGGCGCgGCGGg -3'
miRNA:   3'- -CGUUUuaGGUUUuu-UCCCUGCG-CGUC- -5'
5145 3' -45.5 NC_001798.1 + 131133 0.69 0.999343
Target:  5'- aGCAGGcucugcguGUCCAAccgGAGGGGGAcggcuacaccccCGCGCAc -3'
miRNA:   3'- -CGUUU--------UAGGUU---UUUUCCCU------------GCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 153744 0.69 0.999184
Target:  5'- cGCAgccguAGcgCCAGguggggcgGAAGGGGGCGCuGCGGc -3'
miRNA:   3'- -CGU-----UUuaGGUU--------UUUUCCCUGCG-CGUC- -5'
5145 3' -45.5 NC_001798.1 + 136630 0.69 0.999184
Target:  5'- cGCAGAGcUCUGc---GGGGugGCGCAa -3'
miRNA:   3'- -CGUUUU-AGGUuuuuUCCCugCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 15051 0.69 0.999343
Target:  5'- gGCGGAugggCCc-----GGGGCGCGCGGg -3'
miRNA:   3'- -CGUUUua--GGuuuuuuCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 2258 0.69 0.999583
Target:  5'- cGCGccg-CCGGGGGGcGGGGCGgCGCAGc -3'
miRNA:   3'- -CGUuuuaGGUUUUUU-CCCUGC-GCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.