Results 81 - 100 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5145 | 3' | -45.5 | NC_001798.1 | + | 120395 | 0.7 | 0.998765 |
Target: 5'- gGCGAuGUCCGc--GGGGGccgaucccgugaGCGCGCGGa -3' miRNA: 3'- -CGUUuUAGGUuuuUUCCC------------UGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 49631 | 0.7 | 0.998494 |
Target: 5'- cGCGAGAUCCuau---GGGcCGCGUAc -3' miRNA: 3'- -CGUUUUAGGuuuuuuCCCuGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 90138 | 0.7 | 0.998494 |
Target: 5'- cGCAGGAUCCGAgcGAAaacaGGaGGAUGUGCu- -3' miRNA: 3'- -CGUUUUAGGUU--UUU----UC-CCUGCGCGuc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 114559 | 0.7 | 0.998494 |
Target: 5'- cGCAAcGUCCAGGccguccuGGGGGCguuugaGCGCGGc -3' miRNA: 3'- -CGUUuUAGGUUUuu-----UCCCUG------CGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 145784 | 0.7 | 0.998494 |
Target: 5'- cCGGGGUCCAcac-AGGaGCGCGCGGg -3' miRNA: 3'- cGUUUUAGGUuuuuUCCcUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 17246 | 0.7 | 0.998494 |
Target: 5'- cGCGGGG-CCGAGAAcaaGGACGCGguGu -3' miRNA: 3'- -CGUUUUaGGUUUUUuc-CCUGCGCguC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 22346 | 0.7 | 0.998175 |
Target: 5'- cGCGGGcgUCGGGGcGGGGcCGCGCAu -3' miRNA: 3'- -CGUUUuaGGUUUUuUCCCuGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 135235 | 0.7 | 0.997801 |
Target: 5'- gGCug---CCGGAAGcccGGGGGCGgGCGGg -3' miRNA: 3'- -CGuuuuaGGUUUUU---UCCCUGCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 57547 | 0.7 | 0.997801 |
Target: 5'- gGCGGAugcguUCCGc---GGGGACGCGgAGg -3' miRNA: 3'- -CGUUUu----AGGUuuuuUCCCUGCGCgUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 40182 | 0.7 | 0.997801 |
Target: 5'- gGCcGGGUCCGAAucGAGGagcggcaccGACGCGCAa -3' miRNA: 3'- -CGuUUUAGGUUUu-UUCC---------CUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 153667 | 0.71 | 0.996858 |
Target: 5'- cGCGGcgcGUCCGcgGGcGGGGACGCGgGGg -3' miRNA: 3'- -CGUUu--UAGGUuuUU-UCCCUGCGCgUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 106489 | 0.71 | 0.996858 |
Target: 5'- cCGAGGUCCAcuucgcauAuuAAGGuGACGCGCGu -3' miRNA: 3'- cGUUUUAGGU--------UuuUUCC-CUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 86136 | 0.71 | 0.996858 |
Target: 5'- aGC-GAGUCCuGGGAAgcgcaccgcGGGGCGCGCAu -3' miRNA: 3'- -CGuUUUAGGuUUUUU---------CCCUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 5234 | 0.71 | 0.996858 |
Target: 5'- gGCugauauAGUCCuc----GGGGCGCGCGGg -3' miRNA: 3'- -CGuu----UUAGGuuuuuuCCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 41736 | 0.71 | 0.996858 |
Target: 5'- gGCAAAGcacugCUGAcacAGGGACGCGCAu -3' miRNA: 3'- -CGUUUUa----GGUUuuuUCCCUGCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 128414 | 0.71 | 0.996577 |
Target: 5'- gGCGGGGccugacgaccgccUCCAcgcugcgguGGGGCGCGCAGg -3' miRNA: 3'- -CGUUUU-------------AGGUuuuuu----CCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 40503 | 0.71 | 0.996274 |
Target: 5'- uGCuggg-CCGGGGGAGGGGCaaGCAGa -3' miRNA: 3'- -CGuuuuaGGUUUUUUCCCUGcgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 36613 | 0.71 | 0.995604 |
Target: 5'- nGCGg---CCGGGc-GGGGGCGCGCGGc -3' miRNA: 3'- -CGUuuuaGGUUUuuUCCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 117664 | 0.72 | 0.994838 |
Target: 5'- uGCAAc--CCGc---GGGGACGCGCGGc -3' miRNA: 3'- -CGUUuuaGGUuuuuUCCCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 79136 | 0.72 | 0.994838 |
Target: 5'- cGCGGAggCCGugGAGGAGcuGGGCGCGCGc -3' miRNA: 3'- -CGUUUuaGGU--UUUUUC--CCUGCGCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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