miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 3' -45.5 NC_001798.1 + 58277 0.67 0.99995
Target:  5'- aGCAGcgGGUCCGuGAGGucccGGGGCGCGaGGg -3'
miRNA:   3'- -CGUU--UUAGGUuUUUU----CCCUGCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 58992 0.69 0.999583
Target:  5'- gGCGAAcgCgG---GGGGGGCGCGgAGg -3'
miRNA:   3'- -CGUUUuaGgUuuuUUCCCUGCGCgUC- -5'
5145 3' -45.5 NC_001798.1 + 60868 0.67 0.99991
Target:  5'- cGCGuccUCC-GAAGGGGGGCG-GCGGc -3'
miRNA:   3'- -CGUuuuAGGuUUUUUCCCUGCgCGUC- -5'
5145 3' -45.5 NC_001798.1 + 66303 0.66 0.999993
Target:  5'- cGCAuccauUCCucAAAGGAGgccucccggguacGGAUGCGCAGg -3'
miRNA:   3'- -CGUuuu--AGG--UUUUUUC-------------CCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 66785 0.67 0.999932
Target:  5'- cGCGGAAUCgGAGuc-GGccGACGCGCGc -3'
miRNA:   3'- -CGUUUUAGgUUUuuuCC--CUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 69505 0.68 0.999849
Target:  5'- cGCAGGAcgcgCCGGAGcGGGGcguggcccgcgagcuCGCGCGGg -3'
miRNA:   3'- -CGUUUUa---GGUUUUuUCCCu--------------GCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 76428 0.69 0.999671
Target:  5'- cGCAAGccCCuGGAAGAGcuGGCGCGCAGc -3'
miRNA:   3'- -CGUUUuaGG-UUUUUUCc-CUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 79136 0.72 0.994838
Target:  5'- cGCGGAggCCGugGAGGAGcuGGGCGCGCGc -3'
miRNA:   3'- -CGUUUuaGGU--UUUUUC--CCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 79309 0.67 0.99991
Target:  5'- -aGGAGUUCc-----GGGGCGCGCGGg -3'
miRNA:   3'- cgUUUUAGGuuuuuuCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 83622 0.7 0.998993
Target:  5'- cGUAAGAaucgggCCGGAggcgggagcgGAGGGGAUGUGCGGc -3'
miRNA:   3'- -CGUUUUa-----GGUUU----------UUUCCCUGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 86136 0.71 0.996858
Target:  5'- aGC-GAGUCCuGGGAAgcgcaccgcGGGGCGCGCAu -3'
miRNA:   3'- -CGuUUUAGGuUUUUU---------CCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 87370 0.74 0.974597
Target:  5'- uGCAcacGAUCCugcgcGGAGGGGGGGCGUGCGa -3'
miRNA:   3'- -CGUu--UUAGG-----UUUUUUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 88045 0.7 0.998993
Target:  5'- gGCAGGG-CCGcuGGGGGGGCGgGCu- -3'
miRNA:   3'- -CGUUUUaGGUuuUUUCCCUGCgCGuc -5'
5145 3' -45.5 NC_001798.1 + 88160 0.66 0.999986
Target:  5'- aCGGGAUCCGGuccuugauGGAcGGGaccuGCGCGCGGc -3'
miRNA:   3'- cGUUUUAGGUU--------UUUuCCC----UGCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 88609 0.67 0.99995
Target:  5'- aGCuuGAUCgGGGGGAGGaacaGCGCGCGc -3'
miRNA:   3'- -CGuuUUAGgUUUUUUCCc---UGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 88738 0.73 0.989243
Target:  5'- cGCAugGAGUaCGGAccGGGGGCGCGCAu -3'
miRNA:   3'- -CGU--UUUAgGUUUuuUCCCUGCGCGUc -5'
5145 3' -45.5 NC_001798.1 + 90138 0.7 0.998494
Target:  5'- cGCAGGAUCCGAgcGAAaacaGGaGGAUGUGCu- -3'
miRNA:   3'- -CGUUUUAGGUU--UUU----UC-CCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 90375 0.66 0.99999
Target:  5'- uCGAGGuUCCGAAcgccGucGGGGgGCGCGGu -3'
miRNA:   3'- cGUUUU-AGGUUU----UuuCCCUgCGCGUC- -5'
5145 3' -45.5 NC_001798.1 + 92604 0.66 0.99998
Target:  5'- uGCGAccuaAAgcaCGAGAcgacGGGGGACGCGCu- -3'
miRNA:   3'- -CGUU----UUag-GUUUU----UUCCCUGCGCGuc -5'
5145 3' -45.5 NC_001798.1 + 92752 0.69 0.999475
Target:  5'- aCAAGGUaaCCAuc--GGGGACGCGgAGg -3'
miRNA:   3'- cGUUUUA--GGUuuuuUCCCUGCGCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.