Results 41 - 60 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5145 | 3' | -45.5 | NC_001798.1 | + | 93101 | 0.66 | 0.999993 |
Target: 5'- cGCGAcg-CCGGGAacAAGGGcccgGCGgGCGGg -3' miRNA: 3'- -CGUUuuaGGUUUU--UUCCC----UGCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 101827 | 0.66 | 0.999993 |
Target: 5'- gGUAAGcUCgCGGcgGGGGGAgGCGUGGg -3' miRNA: 3'- -CGUUUuAG-GUUuuUUCCCUgCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 111884 | 0.66 | 0.999993 |
Target: 5'- aGCGAGcUCgGGAGccGGGGGAgGUGCGc -3' miRNA: 3'- -CGUUUuAGgUUUU--UUCCCUgCGCGUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 147613 | 0.66 | 0.999993 |
Target: 5'- gGCGGGGagagGGGGGGGGGGCGgGCGGa -3' miRNA: 3'- -CGUUUUagg-UUUUUUCCCUGCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 7800 | 0.66 | 0.999993 |
Target: 5'- gGCGGGAgCCAGGGucGgacaGGAgGCGCAGc -3' miRNA: 3'- -CGUUUUaGGUUUUuuC----CCUgCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 5615 | 0.66 | 0.99999 |
Target: 5'- cGCGGGcggcUCCGccccAAAGGGGGCGgggcCGCAGg -3' miRNA: 3'- -CGUUUu---AGGUu---UUUUCCCUGC----GCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 88160 | 0.66 | 0.999986 |
Target: 5'- aCGGGAUCCGGuccuugauGGAcGGGaccuGCGCGCGGc -3' miRNA: 3'- cGUUUUAGGUU--------UUUuCCC----UGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 119520 | 0.67 | 0.999963 |
Target: 5'- gGCAGGcgUguuGGGAAGGGACcCGCGGa -3' miRNA: 3'- -CGUUUuaGgu-UUUUUCCCUGcGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 121927 | 0.67 | 0.999963 |
Target: 5'- cGCGcuGGUCCAGc---GGGcCGUGCAGg -3' miRNA: 3'- -CGUu-UUAGGUUuuuuCCCuGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 4853 | 0.67 | 0.999973 |
Target: 5'- gGCGAcGGUCCGGGuucGGGGugG-GCGGc -3' miRNA: 3'- -CGUU-UUAGGUUUuu-UCCCugCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 22391 | 0.67 | 0.999973 |
Target: 5'- gGCGGAAccCCGgcGAGccGGGGCGCGgCGGc -3' miRNA: 3'- -CGUUUUa-GGU--UUUuuCCCUGCGC-GUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 47905 | 0.67 | 0.999973 |
Target: 5'- cGCGGAcccCCAAAAu---GACGCGCGGg -3' miRNA: 3'- -CGUUUua-GGUUUUuuccCUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 105593 | 0.66 | 0.99998 |
Target: 5'- aGUAcGGGUCCAuguucGAGGGcGGCGgGCGGg -3' miRNA: 3'- -CGU-UUUAGGUuu---UUUCC-CUGCgCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 17660 | 0.66 | 0.99998 |
Target: 5'- uGC-AGGUCCAGGAGggguaggaucgcGGGGugGUuCAGg -3' miRNA: 3'- -CGuUUUAGGUUUUU------------UCCCugCGcGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 27187 | 0.66 | 0.99998 |
Target: 5'- cGCGGGcgCgGGGGGAGGGGCGgGgGa -3' miRNA: 3'- -CGUUUuaGgUUUUUUCCCUGCgCgUc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 92604 | 0.66 | 0.99998 |
Target: 5'- uGCGAccuaAAgcaCGAGAcgacGGGGGACGCGCu- -3' miRNA: 3'- -CGUU----UUag-GUUUU----UUCCCUGCGCGuc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 137423 | 0.66 | 0.999985 |
Target: 5'- --cGGGUCCGGGAccGggacccgccccgcGGGGACGCGCu- -3' miRNA: 3'- cguUUUAGGUUUU--U-------------UCCCUGCGCGuc -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 15444 | 0.66 | 0.999986 |
Target: 5'- cCGGAGUCguGGGgcGGGGGGuCGCGUGGg -3' miRNA: 3'- cGUUUUAGguUUU--UUCCCU-GCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 27515 | 0.66 | 0.999986 |
Target: 5'- cGCGGGGgcgCCcgcGGGAAGGcagccccgcGGCGCGCGGg -3' miRNA: 3'- -CGUUUUa--GGu--UUUUUCC---------CUGCGCGUC- -5' |
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5145 | 3' | -45.5 | NC_001798.1 | + | 52864 | 0.66 | 0.999986 |
Target: 5'- aGC-GAGUCCGugcu-GGGGC-CGCGGg -3' miRNA: 3'- -CGuUUUAGGUuuuuuCCCUGcGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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