Results 81 - 100 of 337 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5145 | 5' | -63.7 | NC_001798.1 | + | 120613 | 0.67 | 0.557577 |
Target: 5'- cCGCCGAcuuUGUuaggaCGGGCCgGUCGuCGCCg -3' miRNA: 3'- -GCGGCUc--GCA-----GUCCGGgCGGCuGCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 3786 | 0.67 | 0.557577 |
Target: 5'- gCGCCgGGGCGcCcgAGGCCUcgaaccggGCCcGCGCCu -3' miRNA: 3'- -GCGG-CUCGCaG--UCCGGG--------CGGcUGCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 110991 | 0.67 | 0.557577 |
Target: 5'- aCGCC---CGUCAGGCgCGCgguaugCGugGCCg -3' miRNA: 3'- -GCGGcucGCAGUCCGgGCG------GCugCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 134453 | 0.67 | 0.566073 |
Target: 5'- uCGCCGAGCaccccggcgcgcgGUUggcguGGGCgCGCCuGGcCGCCa -3' miRNA: 3'- -GCGGCUCG-------------CAG-----UCCGgGCGG-CU-GCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 139390 | 0.67 | 0.566073 |
Target: 5'- aCGuCCGGGCacCAGGUCCGCCcccacagcagcccGGgGCCa -3' miRNA: 3'- -GC-GGCUCGcaGUCCGGGCGG-------------CUgCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 38261 | 0.67 | 0.567019 |
Target: 5'- uGCaGGGCGUUuucGGCCUGCCacGugGCa -3' miRNA: 3'- gCGgCUCGCAGu--CCGGGCGG--CugCGg -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 27615 | 0.67 | 0.567019 |
Target: 5'- gCGCgGGGCugcccugccgCccGCCCGCCGcCGCCg -3' miRNA: 3'- -GCGgCUCGca--------GucCGGGCGGCuGCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 76379 | 0.67 | 0.567019 |
Target: 5'- gGCCuGGCucUCGGuCCUGaCCGACGCCg -3' miRNA: 3'- gCGGcUCGc-AGUCcGGGC-GGCUGCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 79565 | 0.67 | 0.567019 |
Target: 5'- gGCCGucAGCGcUCuGGaUCUGCCGuuCGCCa -3' miRNA: 3'- gCGGC--UCGC-AGuCC-GGGCGGCu-GCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 100668 | 0.67 | 0.557577 |
Target: 5'- uGCCGAcauCGaCAcGGUCauccgCGCCGACGCCa -3' miRNA: 3'- gCGGCUc--GCaGU-CCGG-----GCGGCUGCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 130795 | 0.67 | 0.557577 |
Target: 5'- gCGCCGGGUcaaUCAGGCCgugaacCUGACGCa -3' miRNA: 3'- -GCGGCUCGc--AGUCCGGgc----GGCUGCGg -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 59985 | 0.67 | 0.54818 |
Target: 5'- cCGCCGAcaccGCGUUGGGgCCGgUGGCGgUg -3' miRNA: 3'- -GCGGCU----CGCAGUCCgGGCgGCUGCgG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 2073 | 0.67 | 0.549118 |
Target: 5'- cCGCCGcgcucGGCGgaccacuccgggggGGGCCCGCCcccGGCGCg -3' miRNA: 3'- -GCGGC-----UCGCag------------UCCGGGCGG---CUGCGg -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 109624 | 0.67 | 0.553812 |
Target: 5'- gGCCGcGCG-CuaaccgccccgauGGUCCGCCGAgCGCUg -3' miRNA: 3'- gCGGCuCGCaGu------------CCGGGCGGCU-GCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 152618 | 0.67 | 0.554753 |
Target: 5'- cCGCCGAcGCaGaUGGGaguccccccggcgcCCCGCCGGCGCg -3' miRNA: 3'- -GCGGCU-CG-CaGUCC--------------GGGCGGCUGCGg -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 75187 | 0.67 | 0.555694 |
Target: 5'- aCGCUGGGgGcccgccgcccccCGGaGCCCcCCGGCGCCg -3' miRNA: 3'- -GCGGCUCgCa-----------GUC-CGGGcGGCUGCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 3306 | 0.67 | 0.556635 |
Target: 5'- cCGCCGAcggcaacggggcgGCGgcggcggCGGGCuucCCGCgGGCGUCg -3' miRNA: 3'- -GCGGCU-------------CGCa------GUCCG---GGCGgCUGCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 5385 | 0.67 | 0.557577 |
Target: 5'- gCGuCCGuGGCGgc-GGCCCGuuGgucGCGCCg -3' miRNA: 3'- -GC-GGC-UCGCaguCCGGGCggC---UGCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 43132 | 0.67 | 0.557577 |
Target: 5'- gCGCgCGucccGCGUCacgcGGGCCCaGUCGucccGCGCCg -3' miRNA: 3'- -GCG-GCu---CGCAG----UCCGGG-CGGC----UGCGG- -5' |
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5145 | 5' | -63.7 | NC_001798.1 | + | 83969 | 0.67 | 0.557577 |
Target: 5'- gCGaCGGGCGa-GGGCCUGCuCGGCGgCg -3' miRNA: 3'- -GCgGCUCGCagUCCGGGCG-GCUGCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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