miRNA display CGI


Results 101 - 120 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 38261 0.67 0.567019
Target:  5'- uGCaGGGCGUUuucGGCCUGCCacGugGCa -3'
miRNA:   3'- gCGgCUCGCAGu--CCGGGCGG--CugCGg -5'
5145 5' -63.7 NC_001798.1 + 27615 0.67 0.567019
Target:  5'- gCGCgGGGCugcccugccgCccGCCCGCCGcCGCCg -3'
miRNA:   3'- -GCGgCUCGca--------GucCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 76379 0.67 0.567019
Target:  5'- gGCCuGGCucUCGGuCCUGaCCGACGCCg -3'
miRNA:   3'- gCGGcUCGc-AGUCcGGGC-GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 79565 0.67 0.567019
Target:  5'- gGCCGucAGCGcUCuGGaUCUGCCGuuCGCCa -3'
miRNA:   3'- gCGGC--UCGC-AGuCC-GGGCGGCu-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 3306 0.67 0.556635
Target:  5'- cCGCCGAcggcaacggggcgGCGgcggcggCGGGCuucCCGCgGGCGUCg -3'
miRNA:   3'- -GCGGCU-------------CGCa------GUCCG---GGCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 75187 0.67 0.555694
Target:  5'- aCGCUGGGgGcccgccgcccccCGGaGCCCcCCGGCGCCg -3'
miRNA:   3'- -GCGGCUCgCa-----------GUC-CGGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 133019 0.67 0.538833
Target:  5'- gGCCGGaCGUCGcGCCgGCCGAgGUg -3'
miRNA:   3'- gCGGCUcGCAGUcCGGgCGGCUgCGg -5'
5145 5' -63.7 NC_001798.1 + 102511 0.67 0.546306
Target:  5'- gCGCCgGGGUGUCcguAGGCCaccguccccgcgGCCGGCagGCCg -3'
miRNA:   3'- -GCGG-CUCGCAG---UCCGGg-----------CGGCUG--CGG- -5'
5145 5' -63.7 NC_001798.1 + 63440 0.67 0.547243
Target:  5'- aGCCGGuacacGCGcgccgccUCGGGCuuGgCGugGCCc -3'
miRNA:   3'- gCGGCU-----CGC-------AGUCCGggCgGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 35284 0.67 0.54818
Target:  5'- gGCgGGGC-UCGGGCUCuCCGGCGgCu -3'
miRNA:   3'- gCGgCUCGcAGUCCGGGcGGCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 77607 0.67 0.54818
Target:  5'- aGCUGGGCaagGUCAucGGCgCCaCgCGACGCCg -3'
miRNA:   3'- gCGGCUCG---CAGU--CCG-GGcG-GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 79054 0.67 0.54818
Target:  5'- uGUCGGGgcugCGGGCCCaGCCGgccuacgaGCGCCu -3'
miRNA:   3'- gCGGCUCgca-GUCCGGG-CGGC--------UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 121248 0.67 0.54818
Target:  5'- uGCCuGGCGgcggCGGGgguCCCGCUGucCGCCc -3'
miRNA:   3'- gCGGcUCGCa---GUCC---GGGCGGCu-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 69513 0.67 0.54818
Target:  5'- gCGCCgGAGCGgggCGuGGCCCGCgaGcucGCGCg -3'
miRNA:   3'- -GCGG-CUCGCa--GU-CCGGGCGg-C---UGCGg -5'
5145 5' -63.7 NC_001798.1 + 63715 0.67 0.54818
Target:  5'- gGCCGGGUGguugauggugCGGGCCacauagGCgCGGCGCg -3'
miRNA:   3'- gCGGCUCGCa---------GUCCGGg-----CG-GCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 126406 0.67 0.54818
Target:  5'- uCGCCGcuCGUCccccgAGGCCC-CCGGC-CCu -3'
miRNA:   3'- -GCGGCucGCAG-----UCCGGGcGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 59985 0.67 0.54818
Target:  5'- cCGCCGAcaccGCGUUGGGgCCGgUGGCGgUg -3'
miRNA:   3'- -GCGGCU----CGCAGUCCgGGCgGCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 2073 0.67 0.549118
Target:  5'- cCGCCGcgcucGGCGgaccacuccgggggGGGCCCGCCcccGGCGCg -3'
miRNA:   3'- -GCGGC-----UCGCag------------UCCGGGCGG---CUGCGg -5'
5145 5' -63.7 NC_001798.1 + 109624 0.67 0.553812
Target:  5'- gGCCGcGCG-CuaaccgccccgauGGUCCGCCGAgCGCUg -3'
miRNA:   3'- gCGGCuCGCaGu------------CCGGGCGGCU-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 152618 0.67 0.554753
Target:  5'- cCGCCGAcGCaGaUGGGaguccccccggcgcCCCGCCGGCGCg -3'
miRNA:   3'- -GCGGCU-CG-CaGUCC--------------GGGCGGCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.