miRNA display CGI


Results 121 - 140 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 63715 0.67 0.54818
Target:  5'- gGCCGGGUGguugauggugCGGGCCacauagGCgCGGCGCg -3'
miRNA:   3'- gCGGCUCGCa---------GUCCGGg-----CG-GCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 34731 0.68 0.493012
Target:  5'- gGgCGAGgGUCGGGCCCGggagCGGgGCg -3'
miRNA:   3'- gCgGCUCgCAGUCCGGGCg---GCUgCGg -5'
5145 5' -63.7 NC_001798.1 + 26444 0.68 0.493012
Target:  5'- gCGCgaCGAcGCGgacgCGGGCCCGCCccCGCa -3'
miRNA:   3'- -GCG--GCU-CGCa---GUCCGGGCGGcuGCGg -5'
5145 5' -63.7 NC_001798.1 + 2242 0.68 0.48763
Target:  5'- gGCCGAagGCGgCGGGCgCGCCGccggggggcggggcgGCGCa -3'
miRNA:   3'- gCGGCU--CGCaGUCCGgGCGGC---------------UGCGg -5'
5145 5' -63.7 NC_001798.1 + 25093 0.68 0.484058
Target:  5'- cCGCCGGGCGgcgccccgCgccccccgaagaAGaGCCgCGCgGACGCCc -3'
miRNA:   3'- -GCGGCUCGCa-------G------------UC-CGG-GCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 3849 0.68 0.484058
Target:  5'- gGCCGGGgcggcUGUCGcccaGCCCGCCGuacagcacGCGCCc -3'
miRNA:   3'- gCGGCUC-----GCAGUc---CGGGCGGC--------UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 77412 0.68 0.475183
Target:  5'- cCGCCGAccugguaGUcCAGGCgCGCCGggccuGCGCCc -3'
miRNA:   3'- -GCGGCUcg-----CA-GUCCGgGCGGC-----UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 141484 0.68 0.475183
Target:  5'- uCGCCGcGCGggGGGCUgaUGuCCGugGCCc -3'
miRNA:   3'- -GCGGCuCGCagUCCGG--GC-GGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 39625 0.68 0.475183
Target:  5'- gCGCCGgcgggguuuuGGUGUgGagucGGCgCCGCCGGgGCCg -3'
miRNA:   3'- -GCGGC----------UCGCAgU----CCG-GGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 138733 0.68 0.493012
Target:  5'- gGCCGGcGCGcUCcgcGGCCCcggcgaCCGugGCCa -3'
miRNA:   3'- gCGGCU-CGC-AGu--CCGGGc-----GGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 97131 0.68 0.493012
Target:  5'- gCGUCcGGCGaUCGcGCCCGCCacuccaccaugGACGCCu -3'
miRNA:   3'- -GCGGcUCGC-AGUcCGGGCGG-----------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 111587 0.68 0.493012
Target:  5'- -cCUGAGCGggGGGCCCGgCGGgGCg -3'
miRNA:   3'- gcGGCUCGCagUCCGGGCgGCUgCGg -5'
5145 5' -63.7 NC_001798.1 + 75053 0.68 0.502041
Target:  5'- cCGCCGAG-GUCcccGCCUccuccCCGACGCCc -3'
miRNA:   3'- -GCGGCUCgCAGuc-CGGGc----GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 47667 0.68 0.502041
Target:  5'- cCGCCGcGGCG-CuGGCCCGaugcgCGcGCGCCc -3'
miRNA:   3'- -GCGGC-UCGCaGuCCGGGCg----GC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 115851 0.68 0.502041
Target:  5'- aGCUcGGCGUUGGccGCCaCGCCauGGCGCCg -3'
miRNA:   3'- gCGGcUCGCAGUC--CGG-GCGG--CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 93954 0.68 0.502041
Target:  5'- gGCCGAGC-UCgAGGCCCuGCaguaCGugGaCCa -3'
miRNA:   3'- gCGGCUCGcAG-UCCGGG-CG----GCugC-GG- -5'
5145 5' -63.7 NC_001798.1 + 54361 0.68 0.502041
Target:  5'- gCGCCucgcGGCGUCcGGCCCaCCGGgggGCCg -3'
miRNA:   3'- -GCGGc---UCGCAGuCCGGGcGGCUg--CGG- -5'
5145 5' -63.7 NC_001798.1 + 123225 0.68 0.502041
Target:  5'- uCGCgGGGCGgcuaCGGGacccggccuugUCCGCUGACGCg -3'
miRNA:   3'- -GCGgCUCGCa---GUCC-----------GGGCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 31864 0.68 0.501134
Target:  5'- aCGCCGcggagggGGCGgc-GGCCCGCCcccggaagaGGCGCg -3'
miRNA:   3'- -GCGGC-------UCGCaguCCGGGCGG---------CUGCGg -5'
5145 5' -63.7 NC_001798.1 + 31558 0.68 0.475183
Target:  5'- uGCCacAGuCGUCGGGgCgCGCCGcGCGCCc -3'
miRNA:   3'- gCGGc-UC-GCAGUCCgG-GCGGC-UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.