miRNA display CGI


Results 101 - 120 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 126262 0.71 0.319174
Target:  5'- cCGCCGGGCGUCcggacgcccaagcGGCCCcuccccccgagaCGGCGCCg -3'
miRNA:   3'- -GCGGCUCGCAGu------------CCGGGcg----------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 39853 0.71 0.323984
Target:  5'- uGCCGggcgaGGCGUCgAGGCUucgggggUGCCGGCGUCc -3'
miRNA:   3'- gCGGC-----UCGCAG-UCCGG-------GCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 24191 0.71 0.317809
Target:  5'- gGCCuGGCG-CAcguGGCggCCGCCGugGCCa -3'
miRNA:   3'- gCGGcUCGCaGU---CCG--GGCGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 23342 0.71 0.324676
Target:  5'- cCGCCGGcGCGcCc--CCCGCCGGCGCUc -3'
miRNA:   3'- -GCGGCU-CGCaGuccGGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 53246 0.71 0.331653
Target:  5'- gGCCGugGGCGUCcugcGGCagcgCGCCGACGaCCu -3'
miRNA:   3'- gCGGC--UCGCAGu---CCGg---GCGGCUGC-GG- -5'
5145 5' -63.7 NC_001798.1 + 96984 0.71 0.331653
Target:  5'- gCGgCGGGCGgCGgggccagggccGGCCCGCCGccCGCCg -3'
miRNA:   3'- -GCgGCUCGCaGU-----------CCGGGCGGCu-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 151611 0.71 0.331653
Target:  5'- gGCCGGGgGcCGGGCCgggGgCGugGCCg -3'
miRNA:   3'- gCGGCUCgCaGUCCGGg--CgGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 32372 0.71 0.331653
Target:  5'- -cCCGAGCccgGGGCCCGCgaccCGGCGCCc -3'
miRNA:   3'- gcGGCUCGcagUCCGGGCG----GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 52980 0.71 0.338739
Target:  5'- gCGaCCGGGCuGggcGGCCCGCC-ACGCCc -3'
miRNA:   3'- -GC-GGCUCG-CaguCCGGGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 37181 0.71 0.341605
Target:  5'- cCGCuCGGcGCGcCAGGCgCCGCgccgaacgacgggcgCGGCGCCg -3'
miRNA:   3'- -GCG-GCU-CGCaGUCCG-GGCG---------------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 108245 0.71 0.345936
Target:  5'- -aCCGGGCGUCuguGGuugcccaacaCCC-CCGACGCCa -3'
miRNA:   3'- gcGGCUCGCAGu--CC----------GGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 21658 0.71 0.324676
Target:  5'- cCGCCG-GCGUCucuGuCUCGCUGugGCCc -3'
miRNA:   3'- -GCGGCuCGCAGu--CcGGGCGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 28722 0.71 0.331653
Target:  5'- gGcCCGAGC-UCGGGCCCGagcCCGA-GCCc -3'
miRNA:   3'- gC-GGCUCGcAGUCCGGGC---GGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 2612 0.7 0.35324
Target:  5'- gCGCgGGGCG-Cc-GCCCGgCGGCGCCc -3'
miRNA:   3'- -GCGgCUCGCaGucCGGGCgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 77533 0.7 0.35324
Target:  5'- gGCUGGGU-UCggGGGCCUGCUGcACGCCg -3'
miRNA:   3'- gCGGCUCGcAG--UCCGGGCGGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 2812 0.7 0.35324
Target:  5'- gCGCCGGGCc-CAGGgCC-CCGGCGaCCa -3'
miRNA:   3'- -GCGGCUCGcaGUCCgGGcGGCUGC-GG- -5'
5145 5' -63.7 NC_001798.1 + 72351 0.7 0.360653
Target:  5'- uCGCCGAGCG-CGccgacccccuGGUCCGCCagcuggagGACGCg -3'
miRNA:   3'- -GCGGCUCGCaGU----------CCGGGCGG--------CUGCGg -5'
5145 5' -63.7 NC_001798.1 + 147241 0.7 0.360653
Target:  5'- gGCCccgGGGCccCGGGCCgCGCCGGCGgCg -3'
miRNA:   3'- gCGG---CUCGcaGUCCGG-GCGGCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 31667 0.7 0.375802
Target:  5'- gGCCGGGCccgCGccGCCCGCCG-UGCCg -3'
miRNA:   3'- gCGGCUCGca-GUc-CGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 42684 0.7 0.375802
Target:  5'- uCGCCGggaccaccGGCGUCGGGgaaccagucCCCGUCGcCGUCg -3'
miRNA:   3'- -GCGGC--------UCGCAGUCC---------GGGCGGCuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.