miRNA display CGI


Results 61 - 80 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 85685 0.72 0.284492
Target:  5'- uGcCCGGGCGcCAcGCCCagaagcaacccagGCCGACGCCc -3'
miRNA:   3'- gC-GGCUCGCaGUcCGGG-------------CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 51202 0.72 0.284492
Target:  5'- cCGCCGGGCGUCcuuuccgcgccccAGGUCCGUuaCGGCcaggaGCCa -3'
miRNA:   3'- -GCGGCUCGCAG-------------UCCGGGCG--GCUG-----CGG- -5'
5145 5' -63.7 NC_001798.1 + 80930 0.72 0.290165
Target:  5'- uCGCCGAGCGcccucucgccgaCGGGCCC-CCG-UGCCu -3'
miRNA:   3'- -GCGGCUCGCa-----------GUCCGGGcGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 95007 0.72 0.291438
Target:  5'- cCGCaGGGCGgcgCGGGCCUggagGCCGGgGCCc -3'
miRNA:   3'- -GCGgCUCGCa--GUCCGGG----CGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 48867 0.72 0.291438
Target:  5'- cCGCCGGGCGcUCGGGCaCGUCucauuCGCCu -3'
miRNA:   3'- -GCGGCUCGC-AGUCCGgGCGGcu---GCGG- -5'
5145 5' -63.7 NC_001798.1 + 39036 0.72 0.291438
Target:  5'- aCGCC-AGCGUCucaUCCGCgGACGCCa -3'
miRNA:   3'- -GCGGcUCGCAGuccGGGCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 3260 0.72 0.293996
Target:  5'- gCGCCGuAGCcggCGGGCaCCGCgcgcucgucggccggCGACGCCg -3'
miRNA:   3'- -GCGGC-UCGca-GUCCG-GGCG---------------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 72443 0.72 0.297219
Target:  5'- uGCCGguucgagAGCGaCGGGCaCCGCCuGuACGCCg -3'
miRNA:   3'- gCGGC-------UCGCaGUCCG-GGCGG-C-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 28352 0.72 0.297866
Target:  5'- gCGCCGGcggcggccccccGCGUCcccGCCCGCgGACGCg -3'
miRNA:   3'- -GCGGCU------------CGCAGuc-CGGGCGgCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 139311 0.72 0.297866
Target:  5'- uCGCCGccccGCGUCc-GCaUCGCCGGCGCCc -3'
miRNA:   3'- -GCGGCu---CGCAGucCG-GGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 54996 0.72 0.297866
Target:  5'- uCGCCG-GCGUCuugccggcGGGgCCGCCcugccgggaGACGCCc -3'
miRNA:   3'- -GCGGCuCGCAG--------UCCgGGCGG---------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 83849 0.72 0.297866
Target:  5'- cCGuCCGGGCGgcgcuggCGGGCCCGaggCGGCGaCCc -3'
miRNA:   3'- -GC-GGCUCGCa------GUCCGGGCg--GCUGC-GG- -5'
5145 5' -63.7 NC_001798.1 + 2206 0.72 0.297866
Target:  5'- cCGCCGcGCGgcgcagCGGGCCCGa-GGCGCg -3'
miRNA:   3'- -GCGGCuCGCa-----GUCCGGGCggCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 129344 0.72 0.297866
Target:  5'- cCGCgGAGCGcccgcCGGGCCUGgCGGgGCCc -3'
miRNA:   3'- -GCGgCUCGCa----GUCCGGGCgGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 66820 0.72 0.297866
Target:  5'- uCGCgGAGCcc--GGCCCgguGCCGGCGCCc -3'
miRNA:   3'- -GCGgCUCGcaguCCGGG---CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 3962 0.72 0.297866
Target:  5'- gCGCCGGaggccGCGUCGGcGUccagcucgaCCGCCGGgGCCg -3'
miRNA:   3'- -GCGGCU-----CGCAGUC-CG---------GGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 29013 0.72 0.297866
Target:  5'- gCGCCGccGCG-CGGGCCCGgacuccgccCCGGCGaCCg -3'
miRNA:   3'- -GCGGCu-CGCaGUCCGGGC---------GGCUGC-GG- -5'
5145 5' -63.7 NC_001798.1 + 78541 0.72 0.297866
Target:  5'- -aCCGAGCGggucauggCGGGCCUGCgggaGGCGCUg -3'
miRNA:   3'- gcGGCUCGCa-------GUCCGGGCGg---CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25580 0.72 0.303088
Target:  5'- uGCCGGGCGaggaccuggccgCGGGCCgCGCCGGgGgCg -3'
miRNA:   3'- gCGGCUCGCa-----------GUCCGG-GCGGCUgCgG- -5'
5145 5' -63.7 NC_001798.1 + 84758 0.72 0.304404
Target:  5'- cCGUCGGGCGcuuuuaUAGGCCCGgCGuACGUCa -3'
miRNA:   3'- -GCGGCUCGCa-----GUCCGGGCgGC-UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.