miRNA display CGI


Results 81 - 100 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 84758 0.72 0.304404
Target:  5'- cCGUCGGGCGcuuuuaUAGGCCCGgCGuACGUCa -3'
miRNA:   3'- -GCGGCUCGCa-----GUCCGGGCgGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 137329 0.71 0.311052
Target:  5'- uCGgCGGGCGUgGGGUCgGCCaucccugcguucGACGCCc -3'
miRNA:   3'- -GCgGCUCGCAgUCCGGgCGG------------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 86104 0.71 0.311052
Target:  5'- gCGCCGccGCGgac-GCCCGCCG-CGCCg -3'
miRNA:   3'- -GCGGCu-CGCagucCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 26020 0.71 0.317128
Target:  5'- gGCCGGGgGUCuucgcgcgcguggAGGCCgCGCaCGcGCGCCu -3'
miRNA:   3'- gCGGCUCgCAG-------------UCCGG-GCG-GC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 24191 0.71 0.317809
Target:  5'- gGCCuGGCG-CAcguGGCggCCGCCGugGCCa -3'
miRNA:   3'- gCGGcUCGCaGU---CCG--GGCGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 135022 0.71 0.317809
Target:  5'- uGCCcccGCGggCAuGGCCgGCCGugGCCu -3'
miRNA:   3'- gCGGcu-CGCa-GU-CCGGgCGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 116399 0.71 0.318491
Target:  5'- gGCCG-GCugcugcacaacaccCAGGCCCgcgcgGCCGACGCCg -3'
miRNA:   3'- gCGGCuCGca------------GUCCGGG-----CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 126262 0.71 0.319174
Target:  5'- cCGCCGGGCGUCcggacgcccaagcGGCCCcuccccccgagaCGGCGCCg -3'
miRNA:   3'- -GCGGCUCGCAGu------------CCGGGcg----------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 39853 0.71 0.323984
Target:  5'- uGCCGggcgaGGCGUCgAGGCUucgggggUGCCGGCGUCc -3'
miRNA:   3'- gCGGC-----UCGCAG-UCCGG-------GCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 65021 0.71 0.324676
Target:  5'- aCGCCGuGUG-CAGGCCCugcauGCCaAUGCCc -3'
miRNA:   3'- -GCGGCuCGCaGUCCGGG-----CGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 59875 0.71 0.324676
Target:  5'- gGCUGuG-GUCGGGCCgGCCcgagaguccuggGACGCCa -3'
miRNA:   3'- gCGGCuCgCAGUCCGGgCGG------------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 23342 0.71 0.324676
Target:  5'- cCGCCGGcGCGcCc--CCCGCCGGCGCUc -3'
miRNA:   3'- -GCGGCU-CGCaGuccGGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 21658 0.71 0.324676
Target:  5'- cCGCCG-GCGUCucuGuCUCGCUGugGCCc -3'
miRNA:   3'- -GCGGCuCGCAGu--CcGGGCGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 78863 0.71 0.331653
Target:  5'- cCGCCuggGGGCGcucuuugauacUCGGcGCCgCGUCGACGCCc -3'
miRNA:   3'- -GCGG---CUCGC-----------AGUC-CGG-GCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 39545 0.71 0.331653
Target:  5'- uCGCCGuggguGGCGcCGGGgCCGuCCGuccGCGCCg -3'
miRNA:   3'- -GCGGC-----UCGCaGUCCgGGC-GGC---UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 32372 0.71 0.331653
Target:  5'- -cCCGAGCccgGGGCCCGCgaccCGGCGCCc -3'
miRNA:   3'- gcGGCUCGcagUCCGGGCG----GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 27888 0.71 0.331653
Target:  5'- aCGCCGAGCc-CAGccGCCCGCCauguccCGCCg -3'
miRNA:   3'- -GCGGCUCGcaGUC--CGGGCGGcu----GCGG- -5'
5145 5' -63.7 NC_001798.1 + 28722 0.71 0.331653
Target:  5'- gGcCCGAGC-UCGGGCCCGagcCCGA-GCCc -3'
miRNA:   3'- gC-GGCUCGcAGUCCGGGC---GGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 53246 0.71 0.331653
Target:  5'- gGCCGugGGCGUCcugcGGCagcgCGCCGACGaCCu -3'
miRNA:   3'- gCGGC--UCGCAGu---CCGg---GCGGCUGC-GG- -5'
5145 5' -63.7 NC_001798.1 + 116196 0.71 0.331653
Target:  5'- aGCUGGGCGggCAGGCUCagGCCGA-GCUg -3'
miRNA:   3'- gCGGCUCGCa-GUCCGGG--CGGCUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.