miRNA display CGI


Results 101 - 120 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 116196 0.71 0.331653
Target:  5'- aGCUGGGCGggCAGGCUCagGCCGA-GCUg -3'
miRNA:   3'- gCGGCUCGCa-GUCCGGG--CGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 28722 0.71 0.331653
Target:  5'- gGcCCGAGC-UCGGGCCCGagcCCGA-GCCc -3'
miRNA:   3'- gC-GGCUCGcAGUCCGGGC---GGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 67310 0.71 0.338026
Target:  5'- cCGCCGAGCGccacgacggcgguUCGGccaucCCCGCCGGCuGCg -3'
miRNA:   3'- -GCGGCUCGC-------------AGUCc----GGGCGGCUG-CGg -5'
5145 5' -63.7 NC_001798.1 + 103716 0.71 0.338739
Target:  5'- cCGCCGuuguuGCGU---GUCCGCCGACGUCc -3'
miRNA:   3'- -GCGGCu----CGCAgucCGGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 58740 0.71 0.338739
Target:  5'- uGCCGccuauCGUCA-GCCCGCCGACGaCa -3'
miRNA:   3'- gCGGCuc---GCAGUcCGGGCGGCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 52980 0.71 0.338739
Target:  5'- gCGaCCGGGCuGggcGGCCCGCC-ACGCCc -3'
miRNA:   3'- -GC-GGCUCG-CaguCCGGGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 37181 0.71 0.341605
Target:  5'- cCGCuCGGcGCGcCAGGCgCCGCgccgaacgacgggcgCGGCGCCg -3'
miRNA:   3'- -GCG-GCU-CGCaGUCCG-GGCG---------------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 2419 0.71 0.345211
Target:  5'- gCGCCG-GCGUguGGCugggccccggcggCUGgCGGCGCCa -3'
miRNA:   3'- -GCGGCuCGCAguCCG-------------GGCgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 32434 0.71 0.345936
Target:  5'- -cUCGAGCGUCGuGGCCC--UGGCGCCu -3'
miRNA:   3'- gcGGCUCGCAGU-CCGGGcgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 108245 0.71 0.345936
Target:  5'- -aCCGGGCGUCuguGGuugcccaacaCCC-CCGACGCCa -3'
miRNA:   3'- gcGGCUCGCAGu--CC----------GGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 27933 0.71 0.345936
Target:  5'- cCGCCGGG-GUCccGGcGCCgGCCG-CGCCc -3'
miRNA:   3'- -GCGGCUCgCAG--UC-CGGgCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 121996 0.71 0.345936
Target:  5'- gGCCuccGGCGUCgccucgGGGCuCCGCCagGGCGCCc -3'
miRNA:   3'- gCGGc--UCGCAG------UCCG-GGCGG--CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25143 0.71 0.345936
Target:  5'- cCGCCccGCGgccgccccucccgCGGGggccgcgccccccgcCCCGCCGACGCCg -3'
miRNA:   3'- -GCGGcuCGCa------------GUCC---------------GGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 2812 0.7 0.35324
Target:  5'- gCGCCGGGCc-CAGGgCC-CCGGCGaCCa -3'
miRNA:   3'- -GCGGCUCGcaGUCCgGGcGGCUGC-GG- -5'
5145 5' -63.7 NC_001798.1 + 77533 0.7 0.35324
Target:  5'- gGCUGGGU-UCggGGGCCUGCUGcACGCCg -3'
miRNA:   3'- gCGGCUCGcAG--UCCGGGCGGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 35389 0.7 0.35324
Target:  5'- gGaaGGGCGUgGGGCCgGCCgccgGAUGCCc -3'
miRNA:   3'- gCggCUCGCAgUCCGGgCGG----CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 2612 0.7 0.35324
Target:  5'- gCGCgGGGCG-Cc-GCCCGgCGGCGCCc -3'
miRNA:   3'- -GCGgCUCGCaGucCGGGCgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 101774 0.7 0.360653
Target:  5'- gCGCUGcuGGCGUUaacuaAGGCCCGgCCuccGCGCCg -3'
miRNA:   3'- -GCGGC--UCGCAG-----UCCGGGC-GGc--UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 72351 0.7 0.360653
Target:  5'- uCGCCGAGCG-CGccgacccccuGGUCCGCCagcuggagGACGCg -3'
miRNA:   3'- -GCGGCUCGCaGU----------CCGGGCGG--------CUGCGg -5'
5145 5' -63.7 NC_001798.1 + 147241 0.7 0.360653
Target:  5'- gGCCccgGGGCccCGGGCCgCGCCGGCGgCg -3'
miRNA:   3'- gCGG---CUCGcaGUCCGG-GCGGCUGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.