miRNA display CGI


Results 121 - 140 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 141122 0.7 0.368174
Target:  5'- aCGCCGccGGCGcaucggcaacCAGGgCCGCCGACaCCa -3'
miRNA:   3'- -GCGGC--UCGCa---------GUCCgGGCGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 42684 0.7 0.375802
Target:  5'- uCGCCGggaccaccGGCGUCGGGgaaccagucCCCGUCGcCGUCg -3'
miRNA:   3'- -GCGGC--------UCGCAGUCC---------GGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 31667 0.7 0.375802
Target:  5'- gGCCGGGCccgCGccGCCCGCCG-UGCCg -3'
miRNA:   3'- gCGGCUCGca-GUc-CGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 35544 0.7 0.383536
Target:  5'- gCGCgGGGCGUUgccGGCCCGgcCCGGCcCCg -3'
miRNA:   3'- -GCGgCUCGCAGu--CCGGGC--GGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 120213 0.7 0.383536
Target:  5'- aGCuCGGGCccCGGGCcguuggcccCCGCCGAgGCCa -3'
miRNA:   3'- gCG-GCUCGcaGUCCG---------GGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 153389 0.7 0.383536
Target:  5'- gCGCCGGaaccggucGCgGUC-GGCCCGCuCGcGCGCCc -3'
miRNA:   3'- -GCGGCU--------CG-CAGuCCGGGCG-GC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 32619 0.7 0.383536
Target:  5'- aCGCgCGcaacuGCGUgAGGCCCcccgacuacCCGACGCCc -3'
miRNA:   3'- -GCG-GCu----CGCAgUCCGGGc--------GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 124331 0.7 0.390587
Target:  5'- gGCCGggacggcgcggaaAGCGUCAuccGCCCGaCCaGCGCCg -3'
miRNA:   3'- gCGGC-------------UCGCAGUc--CGGGC-GGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 2982 0.7 0.391375
Target:  5'- gGCgGGGCGgccGGCCCGCgGGCcCCg -3'
miRNA:   3'- gCGgCUCGCaguCCGGGCGgCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 86915 0.7 0.391375
Target:  5'- gCGCCGGGCcUCccgcaAGaGCCUGCCGuCGCa -3'
miRNA:   3'- -GCGGCUCGcAG-----UC-CGGGCGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 70074 0.7 0.391375
Target:  5'- uCGCCGAGCGc---GCaCGCCGGuCGCCa -3'
miRNA:   3'- -GCGGCUCGCagucCGgGCGGCU-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 51476 0.7 0.391375
Target:  5'- gGCCGcGUGUCGGGCCCGgagcugcaGGCGgCa -3'
miRNA:   3'- gCGGCuCGCAGUCCGGGCgg------CUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 24720 0.7 0.391375
Target:  5'- gGCCcgcGGGCG-CGGccgcCCCGCCGcACGCCg -3'
miRNA:   3'- gCGG---CUCGCaGUCc---GGGCGGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 1196 0.7 0.391375
Target:  5'- cCGCCGcGGCcagCAccguccccgcgcGGCCCgcgGCCGACGCCc -3'
miRNA:   3'- -GCGGC-UCGca-GU------------CCGGG---CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 51910 0.7 0.391375
Target:  5'- aGCCucacGGCGUUGcGGCCCGUgGGgGCCg -3'
miRNA:   3'- gCGGc---UCGCAGU-CCGGGCGgCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 4098 0.7 0.39454
Target:  5'- gGCCgGGGCGggcucggcccugggCGGGCUCgGCCGggGCGCCg -3'
miRNA:   3'- gCGG-CUCGCa-------------GUCCGGG-CGGC--UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 50925 0.7 0.399318
Target:  5'- uGuCCGuGCG-CGGGCauGCCGuACGCCg -3'
miRNA:   3'- gC-GGCuCGCaGUCCGggCGGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 134982 0.7 0.399318
Target:  5'- uGCCuGGGgGcCuGGCCCGCggugGGCGCCa -3'
miRNA:   3'- gCGG-CUCgCaGuCCGGGCGg---CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 22343 0.7 0.399318
Target:  5'- aCGCgCGGGCGUCGGGgCgggGCCG-CGCa -3'
miRNA:   3'- -GCG-GCUCGCAGUCCgGg--CGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 71714 0.7 0.399318
Target:  5'- gGCCGAGCGccgcuUCAGcGCCgGCCa--GCCc -3'
miRNA:   3'- gCGGCUCGC-----AGUC-CGGgCGGcugCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.