miRNA display CGI


Results 141 - 160 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 22343 0.7 0.399318
Target:  5'- aCGCgCGGGCGUCGGGgCgggGCCG-CGCa -3'
miRNA:   3'- -GCG-GCUCGCAGUCCgGg--CGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 134982 0.7 0.399318
Target:  5'- uGCCuGGGgGcCuGGCCCGCggugGGCGCCa -3'
miRNA:   3'- gCGG-CUCgCaGuCCGGGCGg---CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 50925 0.7 0.399318
Target:  5'- uGuCCGuGCG-CGGGCauGCCGuACGCCg -3'
miRNA:   3'- gC-GGCuCGCaGUCCGggCGGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 71714 0.7 0.399318
Target:  5'- gGCCGAGCGccgcuUCAGcGCCgGCCa--GCCc -3'
miRNA:   3'- gCGGCUCGC-----AGUC-CGGgCGGcugCGG- -5'
5145 5' -63.7 NC_001798.1 + 131332 0.69 0.407362
Target:  5'- aCGCCGcccGCGcccCGGGCgcgaCGUCGGCGCCc -3'
miRNA:   3'- -GCGGCu--CGCa--GUCCGg---GCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 89426 0.69 0.407362
Target:  5'- gGCCGGGCGcUUGGGCgCCuccuuGUCGAgGCCc -3'
miRNA:   3'- gCGGCUCGC-AGUCCG-GG-----CGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 77846 0.69 0.407362
Target:  5'- gCGCCGAGCaggcgcUCGcGGCCaaCGCCGAgGCg -3'
miRNA:   3'- -GCGGCUCGc-----AGU-CCGG--GCGGCUgCGg -5'
5145 5' -63.7 NC_001798.1 + 3170 0.69 0.407362
Target:  5'- gCGCCGucGuCGUCGucgucgucgucGGCCCcgGCCGGCGCg -3'
miRNA:   3'- -GCGGCu-C-GCAGU-----------CCGGG--CGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 153828 0.69 0.407362
Target:  5'- gGCgCG-GCGUgCGGGgCCuCCGGCGCCu -3'
miRNA:   3'- gCG-GCuCGCA-GUCCgGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 55913 0.69 0.407362
Target:  5'- gCGaCGAGCGcaaAGGCCCcgacgaucgcuCCGACGCCg -3'
miRNA:   3'- -GCgGCUCGCag-UCCGGGc----------GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 102891 0.69 0.407362
Target:  5'- uGUCcGGCGaUCccGGCCUGCCGcCGCCg -3'
miRNA:   3'- gCGGcUCGC-AGu-CCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 1797 0.69 0.410609
Target:  5'- gGCCagguaGGCGUgcugccgcgagaccaCGGGCCCGUCGGCggGCCa -3'
miRNA:   3'- gCGGc----UCGCA---------------GUCCGGGCGGCUG--CGG- -5'
5145 5' -63.7 NC_001798.1 + 86200 0.69 0.413054
Target:  5'- uCGCCGAGCcccagccccagCccgaccuggaccuGGGCCCGCUGAUgGCCa -3'
miRNA:   3'- -GCGGCUCGca---------G-------------UCCGGGCGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 58121 0.69 0.414689
Target:  5'- gGCCcGGCGUCuGGGUCCuugugaaGgCGGCGCCg -3'
miRNA:   3'- gCGGcUCGCAG-UCCGGG-------CgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 89664 0.69 0.415508
Target:  5'- uCGCCGAucaccccgcgcuGCG-CGGGCCCGgaGGCGUa -3'
miRNA:   3'- -GCGGCU------------CGCaGUCCGGGCggCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 52366 0.69 0.415508
Target:  5'- gCGCUGGGCGaCAccgcGGCgCGCCGccugcuCGCCa -3'
miRNA:   3'- -GCGGCUCGCaGU----CCGgGCGGCu-----GCGG- -5'
5145 5' -63.7 NC_001798.1 + 50205 0.69 0.415508
Target:  5'- cCGCCuggacGGCGaggaGGuggauaugacGCCCGCCGACGCCc -3'
miRNA:   3'- -GCGGc----UCGCag--UC----------CGGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 151841 0.69 0.423753
Target:  5'- gCGCgGGGCGUgaggCGGGaCCC-CCG-CGCCg -3'
miRNA:   3'- -GCGgCUCGCA----GUCC-GGGcGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 146491 0.69 0.423753
Target:  5'- gGCCGGGC--CGGGCCgGCa-ACGCCc -3'
miRNA:   3'- gCGGCUCGcaGUCCGGgCGgcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 24372 0.69 0.423753
Target:  5'- aCGCCc-GCGggaaGCCCGCCGcCGCCg -3'
miRNA:   3'- -GCGGcuCGCagucCGGGCGGCuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.