miRNA display CGI


Results 81 - 100 of 337 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 121248 0.67 0.54818
Target:  5'- uGCCuGGCGgcggCGGGgguCCCGCUGucCGCCc -3'
miRNA:   3'- gCGGcUCGCa---GUCC---GGGCGGCu-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 69513 0.67 0.54818
Target:  5'- gCGCCgGAGCGgggCGuGGCCCGCgaGcucGCGCg -3'
miRNA:   3'- -GCGG-CUCGCa--GU-CCGGGCGg-C---UGCGg -5'
5145 5' -63.7 NC_001798.1 + 63715 0.67 0.54818
Target:  5'- gGCCGGGUGguugauggugCGGGCCacauagGCgCGGCGCg -3'
miRNA:   3'- gCGGCUCGCa---------GUCCGGg-----CG-GCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 126406 0.67 0.54818
Target:  5'- uCGCCGcuCGUCccccgAGGCCC-CCGGC-CCu -3'
miRNA:   3'- -GCGGCucGCAG-----UCCGGGcGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 63440 0.67 0.547243
Target:  5'- aGCCGGuacacGCGcgccgccUCGGGCuuGgCGugGCCc -3'
miRNA:   3'- gCGGCU-----CGC-------AGUCCGggCgGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 102511 0.67 0.546306
Target:  5'- gCGCCgGGGUGUCcguAGGCCaccguccccgcgGCCGGCagGCCg -3'
miRNA:   3'- -GCGG-CUCGCAG---UCCGGg-----------CGGCUG--CGG- -5'
5145 5' -63.7 NC_001798.1 + 97198 0.67 0.538833
Target:  5'- aGCgCGAGCugcagCAGGagaCCGCCgcgGugGCCg -3'
miRNA:   3'- gCG-GCUCGca---GUCCg--GGCGG---CugCGG- -5'
5145 5' -63.7 NC_001798.1 + 16632 0.67 0.538833
Target:  5'- gCGCCGGG-G-CAGGUcuugCCGCCcGGCGUCc -3'
miRNA:   3'- -GCGGCUCgCaGUCCG----GGCGG-CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 109047 0.67 0.538833
Target:  5'- gGCCGGccccagguaucGCGUCuuuguccugGGGgCC-CCGACGCCc -3'
miRNA:   3'- gCGGCU-----------CGCAG---------UCCgGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 151582 0.67 0.538833
Target:  5'- uCGgCGGGCGUgGGG-CUGCCcuGGCGCUc -3'
miRNA:   3'- -GCgGCUCGCAgUCCgGGCGG--CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 5301 0.67 0.538833
Target:  5'- aCGCCGccGCGcCccGGCUCGCCGGgguucCGCCc -3'
miRNA:   3'- -GCGGCu-CGCaGu-CCGGGCGGCU-----GCGG- -5'
5145 5' -63.7 NC_001798.1 + 98579 0.67 0.538833
Target:  5'- gGCCGcgguGGCGUCGGcGgCC-CCGGCgGCCc -3'
miRNA:   3'- gCGGC----UCGCAGUC-CgGGcGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 124143 0.67 0.538833
Target:  5'- cCGCCGuGGCGg-AGGCCUGUCccuGCGUCg -3'
miRNA:   3'- -GCGGC-UCGCagUCCGGGCGGc--UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 133019 0.67 0.538833
Target:  5'- gGCCGGaCGUCGcGCCgGCCGAgGUg -3'
miRNA:   3'- gCGGCUcGCAGUcCGGgCGGCUgCGg -5'
5145 5' -63.7 NC_001798.1 + 57155 0.67 0.529542
Target:  5'- aGCCGcGgGcUGGcGCCCggGCCGGCGCCc -3'
miRNA:   3'- gCGGCuCgCaGUC-CGGG--CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 115579 0.67 0.529542
Target:  5'- aCGCCuGGCGgCAGcGCCuCGCCcACgGCCg -3'
miRNA:   3'- -GCGGcUCGCaGUC-CGG-GCGGcUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 75261 0.67 0.529542
Target:  5'- gGCCGccacGGCgGUCcGGCUCGCggcgcgCGAUGCCg -3'
miRNA:   3'- gCGGC----UCG-CAGuCCGGGCG------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 82071 0.67 0.529542
Target:  5'- gGCCccGCGgccGGCCCaccCCGGCGCCu -3'
miRNA:   3'- gCGGcuCGCaguCCGGGc--GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 26344 0.67 0.529542
Target:  5'- aCGCCGuGCG-CGgcGGCCCGgCGGaGCUg -3'
miRNA:   3'- -GCGGCuCGCaGU--CCGGGCgGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 72489 0.67 0.529542
Target:  5'- aCGCCcacGAGCGcCugGGGCCCuggcgccCCGAgGCCa -3'
miRNA:   3'- -GCGG---CUCGCaG--UCCGGGc------GGCUgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.