miRNA display CGI


Results 101 - 120 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 96049 0.67 0.528616
Target:  5'- gCGaCGGGCauaaagaggggauGUCagGGGCCCGCCGcCGCa -3'
miRNA:   3'- -GCgGCUCG-------------CAG--UCCGGGCGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 53102 0.67 0.523073
Target:  5'- aCGCCGGGCGcgCGgcgcgagcucccugcGGCUggcgcggUGCCuGACGCCg -3'
miRNA:   3'- -GCGGCUCGCa-GU---------------CCGG-------GCGG-CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25272 0.67 0.52031
Target:  5'- nCGCC-AGcCGcCgGGGCCCagccacacGCCGGCGCCc -3'
miRNA:   3'- -GCGGcUC-GCaG-UCCGGG--------CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 59940 0.67 0.52031
Target:  5'- gGCCGAGCcaguUCAGGCagacCCGCUGGgGUUu -3'
miRNA:   3'- gCGGCUCGc---AGUCCG----GGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 121792 0.67 0.52031
Target:  5'- -cUCGGGCGgggcCGGGCCgGCCGuuGUCg -3'
miRNA:   3'- gcGGCUCGCa---GUCCGGgCGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 24891 0.67 0.52031
Target:  5'- uCGCCgGGGCccUGGGCCCGgCGcUGCCg -3'
miRNA:   3'- -GCGG-CUCGcaGUCCGGGCgGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25706 0.67 0.52031
Target:  5'- cCGCCuGGGCGggcaacuggacCGGcGCCC-CCGACGUCu -3'
miRNA:   3'- -GCGG-CUCGCa----------GUC-CGGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 34794 0.67 0.52031
Target:  5'- cCGCCGGcGCGgccCGGGgCC-CCGGgGCCc -3'
miRNA:   3'- -GCGGCU-CGCa--GUCCgGGcGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 43263 0.67 0.52031
Target:  5'- uCGCCGggGGCGUCGuGCCCugcugcuCCGugGCg -3'
miRNA:   3'- -GCGGC--UCGCAGUcCGGGc------GGCugCGg -5'
5145 5' -63.7 NC_001798.1 + 129684 0.67 0.52031
Target:  5'- -cCCGGGCGcCgGGGCCCcaguaCCGGCGCg -3'
miRNA:   3'- gcGGCUCGCaG-UCCGGGc----GGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 147919 0.67 0.511141
Target:  5'- aGgCGcGgGUCGGGCCCGU--ACGCCc -3'
miRNA:   3'- gCgGCuCgCAGUCCGGGCGgcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 23886 0.67 0.511141
Target:  5'- gCGcCCGAgGCGgaggaggcgCGGGCCCGguUCGAgGCCu -3'
miRNA:   3'- -GC-GGCU-CGCa--------GUCCGGGC--GGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 134728 0.67 0.511141
Target:  5'- aGCCcGGCGaCGGGUucuCCGCCccGGCGCUg -3'
miRNA:   3'- gCGGcUCGCaGUCCG---GGCGG--CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 32245 0.67 0.511141
Target:  5'- gGCUgguggGAGCGUCGcGUCCGCgucCGGCGCUg -3'
miRNA:   3'- gCGG-----CUCGCAGUcCGGGCG---GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 9148 0.67 0.511141
Target:  5'- aCG-CGGGCG-C-GGCgCCGCCcGCGCCg -3'
miRNA:   3'- -GCgGCUCGCaGuCCG-GGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 128949 0.67 0.511141
Target:  5'- gCGcCCGGGCGcguucCGGGCCCGgaggaGGCGCUc -3'
miRNA:   3'- -GC-GGCUCGCa----GUCCGGGCgg---CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25954 0.67 0.511141
Target:  5'- gCGCCGuGCG-CuGGCCgGC-GGCGCg -3'
miRNA:   3'- -GCGGCuCGCaGuCCGGgCGgCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 34978 0.67 0.511141
Target:  5'- cCGCCGAgguGCGg-GGGCCCcuccgGCCGGgGCg -3'
miRNA:   3'- -GCGGCU---CGCagUCCGGG-----CGGCUgCGg -5'
5145 5' -63.7 NC_001798.1 + 53302 0.67 0.511141
Target:  5'- gCGCCGAucgcaGCGUCcGGCUgGC-GGCGCg -3'
miRNA:   3'- -GCGGCU-----CGCAGuCCGGgCGgCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 107280 0.67 0.511141
Target:  5'- aCGCCGAcCGcCuGGCCagaCGCCaACGCCc -3'
miRNA:   3'- -GCGGCUcGCaGuCCGG---GCGGcUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.