miRNA display CGI


Results 61 - 80 of 337 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 25772 0.69 0.440532
Target:  5'- uGCUGuccacGCGggacCuGGCCuuCGCCGGCGCCg -3'
miRNA:   3'- gCGGCu----CGCa---GuCCGG--GCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 25862 0.76 0.156531
Target:  5'- aCGCCGuGCG-CGccgcggacuGGCCCGCCGACggGCCc -3'
miRNA:   3'- -GCGGCuCGCaGU---------CCGGGCGGCUG--CGG- -5'
5145 5' -63.7 NC_001798.1 + 25954 0.67 0.511141
Target:  5'- gCGCCGuGCG-CuGGCCgGC-GGCGCg -3'
miRNA:   3'- -GCGGCuCGCaGuCCGGgCGgCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 26020 0.71 0.317128
Target:  5'- gGCCGGGgGUCuucgcgcgcguggAGGCCgCGCaCGcGCGCCu -3'
miRNA:   3'- gCGGCUCgCAG-------------UCCGG-GCG-GC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 26199 0.72 0.278908
Target:  5'- gGCCGGGCcgccgccUCGGGCgCgGgCGACGCCa -3'
miRNA:   3'- gCGGCUCGc------AGUCCG-GgCgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 26344 0.67 0.529542
Target:  5'- aCGCCGuGCG-CGgcGGCCCGgCGGaGCUg -3'
miRNA:   3'- -GCGGCuCGCaGU--CCGGGCgGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 26444 0.68 0.493012
Target:  5'- gCGCgaCGAcGCGgacgCGGGCCCGCCccCGCa -3'
miRNA:   3'- -GCG--GCU-CGCa---GUCCGGGCGGcuGCGg -5'
5145 5' -63.7 NC_001798.1 + 26480 0.72 0.304404
Target:  5'- aCGCUGGGCGUC-GGCCgcggGCCG-CGCg -3'
miRNA:   3'- -GCGGCUCGCAGuCCGGg---CGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 27170 0.69 0.440532
Target:  5'- uGCugCGAGC-UCGGGgCCGCgGGCGCg -3'
miRNA:   3'- gCG--GCUCGcAGUCCgGGCGgCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 27615 0.67 0.567019
Target:  5'- gCGCgGGGCugcccugccgCccGCCCGCCGcCGCCg -3'
miRNA:   3'- -GCGgCUCGca--------GucCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 27888 0.71 0.331653
Target:  5'- aCGCCGAGCc-CAGccGCCCGCCauguccCGCCg -3'
miRNA:   3'- -GCGGCUCGcaGUC--CGGGCGGcu----GCGG- -5'
5145 5' -63.7 NC_001798.1 + 27933 0.71 0.345936
Target:  5'- cCGCCGGG-GUCccGGcGCCgGCCG-CGCCc -3'
miRNA:   3'- -GCGGCUCgCAG--UC-CGGgCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 28352 0.72 0.297866
Target:  5'- gCGCCGGcggcggccccccGCGUCcccGCCCGCgGACGCg -3'
miRNA:   3'- -GCGGCU------------CGCAGuc-CGGGCGgCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 28567 0.73 0.255141
Target:  5'- uCGCCGcGCGUgCAGGUgCGCCaucugGugGCCu -3'
miRNA:   3'- -GCGGCuCGCA-GUCCGgGCGG-----CugCGG- -5'
5145 5' -63.7 NC_001798.1 + 28722 0.71 0.331653
Target:  5'- gGcCCGAGC-UCGGGCCCGagcCCGA-GCCc -3'
miRNA:   3'- gC-GGCUCGcAGUCCGGGC---GGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 28795 0.66 0.624324
Target:  5'- gCGgCGGcGCG-CGGGUCCuCCGcCGCCg -3'
miRNA:   3'- -GCgGCU-CGCaGUCCGGGcGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 29013 0.72 0.297866
Target:  5'- gCGCCGccGCG-CGGGCCCGgacuccgccCCGGCGaCCg -3'
miRNA:   3'- -GCGGCu-CGCaGUCCGGGC---------GGCUGC-GG- -5'
5145 5' -63.7 NC_001798.1 + 30449 0.85 0.039683
Target:  5'- gGCCGAGCGcCAGggcagccccacGCCCGCCGACGCg -3'
miRNA:   3'- gCGGCUCGCaGUC-----------CGGGCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 30767 0.66 0.586019
Target:  5'- gGCCGAGgCGgccgugCGGGCCgGCaCGGcCGUg -3'
miRNA:   3'- gCGGCUC-GCa-----GUCCGGgCG-GCU-GCGg -5'
5145 5' -63.7 NC_001798.1 + 31558 0.68 0.475183
Target:  5'- uGCCacAGuCGUCGGGgCgCGCCGcGCGCCc -3'
miRNA:   3'- gCGGc-UC-GCAGUCCgG-GCGGC-UGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.