miRNA display CGI


Results 81 - 100 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 31595 0.66 0.576502
Target:  5'- gGCCGucgccccgcGCGUcCGGaGUCCGCCccGCGCCg -3'
miRNA:   3'- gCGGCu--------CGCA-GUC-CGGGCGGc-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 31667 0.7 0.375802
Target:  5'- gGCCGGGCccgCGccGCCCGCCG-UGCCg -3'
miRNA:   3'- gCGGCUCGca-GUc-CGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 31764 0.7 0.399318
Target:  5'- gGCCGGGC---AGGCgCGaCCGACGCg -3'
miRNA:   3'- gCGGCUCGcagUCCGgGC-GGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 31864 0.68 0.501134
Target:  5'- aCGCCGcggagggGGCGgc-GGCCCGCCcccggaagaGGCGCg -3'
miRNA:   3'- -GCGGC-------UCGCaguCCGGGCGG---------CUGCGg -5'
5145 5' -63.7 NC_001798.1 + 32070 0.69 0.432095
Target:  5'- gCGCCGcgcccccgucGGCGUCuccgucgucccAGGCCgcgguCGCCGcCGCCu -3'
miRNA:   3'- -GCGGC----------UCGCAG-----------UCCGG-----GCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 32245 0.67 0.511141
Target:  5'- gGCUgguggGAGCGUCGcGUCCGCgucCGGCGCUg -3'
miRNA:   3'- gCGG-----CUCGCAGUcCGGGCG---GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 32372 0.71 0.331653
Target:  5'- -cCCGAGCccgGGGCCCGCgaccCGGCGCCc -3'
miRNA:   3'- gcGGCUCGcagUCCGGGCG----GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 32434 0.71 0.345936
Target:  5'- -cUCGAGCGUCGuGGCCC--UGGCGCCu -3'
miRNA:   3'- gcGGCUCGCAGU-CCGGGcgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 32619 0.7 0.383536
Target:  5'- aCGCgCGcaacuGCGUgAGGCCCcccgacuacCCGACGCCc -3'
miRNA:   3'- -GCG-GCu----CGCAgUCCGGGc--------GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 34114 0.76 0.149194
Target:  5'- gCGgUGGGCGUaCGGGCCCGaCCcGCGCCu -3'
miRNA:   3'- -GCgGCUCGCA-GUCCGGGC-GGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 34731 0.68 0.493012
Target:  5'- gGgCGAGgGUCGGGCCCGggagCGGgGCg -3'
miRNA:   3'- gCgGCUCgCAGUCCGGGCg---GCUgCGg -5'
5145 5' -63.7 NC_001798.1 + 34794 0.67 0.52031
Target:  5'- cCGCCGGcGCGgccCGGGgCC-CCGGgGCCc -3'
miRNA:   3'- -GCGGCU-CGCa--GUCCgGGcGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 34852 0.75 0.193722
Target:  5'- cCGCCGGGCGg-GGGacgccuUCCGcCCGGCGCCg -3'
miRNA:   3'- -GCGGCUCGCagUCC------GGGC-GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 34978 0.67 0.511141
Target:  5'- cCGCCGAgguGCGg-GGGCCCcuccgGCCGGgGCg -3'
miRNA:   3'- -GCGGCU---CGCagUCCGGG-----CGGCUgCGg -5'
5145 5' -63.7 NC_001798.1 + 35284 0.67 0.54818
Target:  5'- gGCgGGGC-UCGGGCUCuCCGGCGgCu -3'
miRNA:   3'- gCGgCUCGcAGUCCGGGcGGCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 35389 0.7 0.35324
Target:  5'- gGaaGGGCGUgGGGCCgGCCgccgGAUGCCc -3'
miRNA:   3'- gCggCUCGCAgUCCGGgCGG----CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 35435 0.68 0.475183
Target:  5'- gGCgGgaGGCGU-GGG-CCGCUGGCGCCg -3'
miRNA:   3'- gCGgC--UCGCAgUCCgGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 35544 0.7 0.383536
Target:  5'- gCGCgGGGCGUUgccGGCCCGgcCCGGCcCCg -3'
miRNA:   3'- -GCGgCUCGCAGu--CCGGGC--GGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 36313 0.69 0.432095
Target:  5'- gGCgGGGCG-CGGGCCgggGCCGGgGCUc -3'
miRNA:   3'- gCGgCUCGCaGUCCGGg--CGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 36511 0.69 0.432095
Target:  5'- gGCCGGGCGg-GGGCgCGC-GGCgGCCg -3'
miRNA:   3'- gCGGCUCGCagUCCGgGCGgCUG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.