miRNA display CGI


Results 101 - 120 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 36553 0.69 0.432095
Target:  5'- gGCCGGGCGg-GGGCgCGC-GGCgGCCg -3'
miRNA:   3'- gCGGCUCGCagUCCGgGCGgCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 36595 0.69 0.432095
Target:  5'- gGCCGGGCGg-GGGCgCGC-GGCgGCCg -3'
miRNA:   3'- gCGGCUCGCagUCCGgGCGgCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 36637 0.66 0.586019
Target:  5'- gGCCGGGCGg-GGGCgCGCuuuccccgCGuCGCCc -3'
miRNA:   3'- gCGGCUCGCagUCCGgGCG--------GCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 37181 0.71 0.341605
Target:  5'- cCGCuCGGcGCGcCAGGCgCCGCgccgaacgacgggcgCGGCGCCg -3'
miRNA:   3'- -GCG-GCU-CGCaGUCCG-GGCG---------------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 37393 0.66 0.58316
Target:  5'- cCGaCCGAGCcaccgggcggguccGUgGGGCCgGCCGACcaaccCCg -3'
miRNA:   3'- -GC-GGCUCG--------------CAgUCCGGgCGGCUGc----GG- -5'
5145 5' -63.7 NC_001798.1 + 38261 0.67 0.567019
Target:  5'- uGCaGGGCGUUuucGGCCUGCCacGugGCa -3'
miRNA:   3'- gCGgCUCGCAGu--CCGGGCGG--CugCGg -5'
5145 5' -63.7 NC_001798.1 + 39036 0.72 0.291438
Target:  5'- aCGCC-AGCGUCucaUCCGCgGACGCCa -3'
miRNA:   3'- -GCGGcUCGCAGuccGGGCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 39545 0.71 0.331653
Target:  5'- uCGCCGuggguGGCGcCGGGgCCGuCCGuccGCGCCg -3'
miRNA:   3'- -GCGGC-----UCGCaGUCCgGGC-GGC---UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 39625 0.68 0.475183
Target:  5'- gCGCCGgcgggguuuuGGUGUgGagucGGCgCCGCCGGgGCCg -3'
miRNA:   3'- -GCGGC----------UCGCAgU----CCG-GGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 39853 0.71 0.323984
Target:  5'- uGCCGggcgaGGCGUCgAGGCUucgggggUGCCGGCGUCc -3'
miRNA:   3'- gCGGC-----UCGCAG-UCCGG-------GCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 40321 0.72 0.272805
Target:  5'- cCGUCGGGCGUCAccgccCCCGCCccCGCCg -3'
miRNA:   3'- -GCGGCUCGCAGUcc---GGGCGGcuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 41178 0.66 0.605136
Target:  5'- gGCCG-GCGUaguucaaaagaUAGG-UCGCCGGgGCCa -3'
miRNA:   3'- gCGGCuCGCA-----------GUCCgGGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 42684 0.7 0.375802
Target:  5'- uCGCCGggaccaccGGCGUCGGGgaaccagucCCCGUCGcCGUCg -3'
miRNA:   3'- -GCGGC--------UCGCAGUCC---------GGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 43079 0.8 0.082718
Target:  5'- gCGCCGGGC-UCGGGCgCCGCCGcCGCg -3'
miRNA:   3'- -GCGGCUCGcAGUCCG-GGCGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 43132 0.67 0.557577
Target:  5'- gCGCgCGucccGCGUCacgcGGGCCCaGUCGucccGCGCCg -3'
miRNA:   3'- -GCG-GCu---CGCAG----UCCGGG-CGGC----UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 43263 0.67 0.52031
Target:  5'- uCGCCGggGGCGUCGuGCCCugcugcuCCGugGCg -3'
miRNA:   3'- -GCGGC--UCGCAGUcCGGGc------GGCugCGg -5'
5145 5' -63.7 NC_001798.1 + 43479 0.74 0.222636
Target:  5'- gGgCGGGCGUgAGGgCCGCCGGgGCa -3'
miRNA:   3'- gCgGCUCGCAgUCCgGGCGGCUgCGg -5'
5145 5' -63.7 NC_001798.1 + 43671 0.66 0.611846
Target:  5'- cCGCgGGGCuggggucgugggugGUCAcGGCCCGgagaugCGugGCCa -3'
miRNA:   3'- -GCGgCUCG--------------CAGU-CCGGGCg-----GCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 47667 0.68 0.502041
Target:  5'- cCGCCGcGGCG-CuGGCCCGaugcgCGcGCGCCc -3'
miRNA:   3'- -GCGGC-UCGCaGuCCGGGCg----GC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 48867 0.72 0.291438
Target:  5'- cCGCCGGGCGcUCGGGCaCGUCucauuCGCCu -3'
miRNA:   3'- -GCGGCUCGC-AGUCCGgGCGGcu---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.