miRNA display CGI


Results 121 - 140 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 49050 0.76 0.16815
Target:  5'- gGCUGA--GUCAGGCCCaGCUGAUGCCc -3'
miRNA:   3'- gCGGCUcgCAGUCCGGG-CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 50205 0.69 0.415508
Target:  5'- cCGCCuggacGGCGaggaGGuggauaugacGCCCGCCGACGCCc -3'
miRNA:   3'- -GCGGc----UCGCag--UC----------CGGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 50925 0.7 0.399318
Target:  5'- uGuCCGuGCG-CGGGCauGCCGuACGCCg -3'
miRNA:   3'- gC-GGCuCGCaGUCCGggCGGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 51165 0.69 0.440532
Target:  5'- -cCCGAcgcGCGUCcgAGGCCCGggcggCGGCGCCc -3'
miRNA:   3'- gcGGCU---CGCAG--UCCGGGCg----GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 51202 0.72 0.284492
Target:  5'- cCGCCGGGCGUCcuuuccgcgccccAGGUCCGUuaCGGCcaggaGCCa -3'
miRNA:   3'- -GCGGCUCGCAG-------------UCCGGGCG--GCUG-----CGG- -5'
5145 5' -63.7 NC_001798.1 + 51476 0.7 0.391375
Target:  5'- gGCCGcGUGUCGGGCCCGgagcugcaGGCGgCa -3'
miRNA:   3'- gCGGCuCGCAGUCCGGGCgg------CUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 51910 0.7 0.391375
Target:  5'- aGCCucacGGCGUUGcGGCCCGUgGGgGCCg -3'
miRNA:   3'- gCGGc---UCGCAGU-CCGGGCGgCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 52366 0.69 0.415508
Target:  5'- gCGCUGGGCGaCAccgcGGCgCGCCGccugcuCGCCa -3'
miRNA:   3'- -GCGGCUCGCaGU----CCGgGCGGCu-----GCGG- -5'
5145 5' -63.7 NC_001798.1 + 52980 0.71 0.338739
Target:  5'- gCGaCCGGGCuGggcGGCCCGCC-ACGCCc -3'
miRNA:   3'- -GC-GGCUCG-CaguCCGGGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 53102 0.67 0.523073
Target:  5'- aCGCCGGGCGcgCGgcgcgagcucccugcGGCUggcgcggUGCCuGACGCCg -3'
miRNA:   3'- -GCGGCUCGCa-GU---------------CCGG-------GCGG-CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 53246 0.71 0.331653
Target:  5'- gGCCGugGGCGUCcugcGGCagcgCGCCGACGaCCu -3'
miRNA:   3'- gCGGC--UCGCAGu---CCGg---GCGGCUGC-GG- -5'
5145 5' -63.7 NC_001798.1 + 53302 0.67 0.511141
Target:  5'- gCGCCGAucgcaGCGUCcGGCUgGC-GGCGCg -3'
miRNA:   3'- -GCGGCU-----CGCAGuCCGGgCGgCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 53441 0.66 0.586019
Target:  5'- gGUgGAGCuGUCGggcGGCCagcugaGCCG-CGCCa -3'
miRNA:   3'- gCGgCUCG-CAGU---CCGGg-----CGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 53647 0.66 0.614724
Target:  5'- aCGCCGccGCGguggCGGGgUUGCgCGACGCg -3'
miRNA:   3'- -GCGGCu-CGCa---GUCCgGGCG-GCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 53827 0.68 0.465515
Target:  5'- aGUaCGuGUGUCgccgccuGGGcCCCGCCGAuCGCCg -3'
miRNA:   3'- gCG-GCuCGCAG-------UCC-GGGCGGCU-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 54361 0.68 0.502041
Target:  5'- gCGCCucgcGGCGUCcGGCCCaCCGGgggGCCg -3'
miRNA:   3'- -GCGGc---UCGCAGuCCGGGcGGCUg--CGG- -5'
5145 5' -63.7 NC_001798.1 + 54798 0.75 0.173832
Target:  5'- aCGCCGccaugcccgcgGGCGUCGGGCuuggcgccacccccgCCGCCGACaCCa -3'
miRNA:   3'- -GCGGC-----------UCGCAGUCCG---------------GGCGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 54855 0.66 0.624324
Target:  5'- cCGCCGc-CGcCuGGCCgGCCGAaaGCCa -3'
miRNA:   3'- -GCGGCucGCaGuCCGGgCGGCUg-CGG- -5'
5145 5' -63.7 NC_001798.1 + 54996 0.72 0.297866
Target:  5'- uCGCCG-GCGUCuugccggcGGGgCCGCCcugccgggaGACGCCc -3'
miRNA:   3'- -GCGGCuCGCAG--------UCCgGGCGG---------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 55769 0.66 0.586019
Target:  5'- gGCCGGcGCGcugCAG--CCGCCGACcGCCu -3'
miRNA:   3'- gCGGCU-CGCa--GUCcgGGCGGCUG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.