miRNA display CGI


Results 141 - 160 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 55913 0.69 0.407362
Target:  5'- gCGaCGAGCGcaaAGGCCCcgacgaucgcuCCGACGCCg -3'
miRNA:   3'- -GCgGCUCGCag-UCCGGGc----------GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 56760 0.66 0.585066
Target:  5'- aGCUGGcaggugaaggugcGCGggGGGCCCuggccGCCGACgGCCg -3'
miRNA:   3'- gCGGCU-------------CGCagUCCGGG-----CGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 57155 0.67 0.529542
Target:  5'- aGCCGcGgGcUGGcGCCCggGCCGGCGCCc -3'
miRNA:   3'- gCGGCuCgCaGUC-CGGG--CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 58121 0.69 0.414689
Target:  5'- gGCCcGGCGUCuGGGUCCuugugaaGgCGGCGCCg -3'
miRNA:   3'- gCGGcUCGCAG-UCCGGG-------CgGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 58301 0.78 0.127153
Target:  5'- gGCgCGAGggucugacacagcucCGUCAGGCCCGCCGcCGCg -3'
miRNA:   3'- gCG-GCUC---------------GCAGUCCGGGCGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 58686 0.72 0.278908
Target:  5'- cCGCCGc-CGUCAGGgCCGCggCGGCGCg -3'
miRNA:   3'- -GCGGCucGCAGUCCgGGCG--GCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 58740 0.71 0.338739
Target:  5'- uGCCGccuauCGUCA-GCCCGCCGACGaCa -3'
miRNA:   3'- gCGGCuc---GCAGUcCGGGCGGCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 59875 0.71 0.324676
Target:  5'- gGCUGuG-GUCGGGCCgGCCcgagaguccuggGACGCCa -3'
miRNA:   3'- gCGGCuCgCAGUCCGGgCGG------------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 59940 0.67 0.52031
Target:  5'- gGCCGAGCcaguUCAGGCagacCCGCUGGgGUUu -3'
miRNA:   3'- gCGGCUCGc---AGUCCG----GGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 59985 0.67 0.54818
Target:  5'- cCGCCGAcaccGCGUUGGGgCCGgUGGCGgUg -3'
miRNA:   3'- -GCGGCU----CGCAGUCCgGGCgGCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 61692 0.69 0.449062
Target:  5'- gGCCaaGGCGaUCcuGGCCCGCaCGACgGCCc -3'
miRNA:   3'- gCGGc-UCGC-AGu-CCGGGCG-GCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 62257 0.72 0.278908
Target:  5'- cCGCCccGAGCcgauccCAGGCCCGCCgGGCgGCCc -3'
miRNA:   3'- -GCGG--CUCGca----GUCCGGGCGG-CUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 63440 0.67 0.547243
Target:  5'- aGCCGGuacacGCGcgccgccUCGGGCuuGgCGugGCCc -3'
miRNA:   3'- gCGGCU-----CGC-------AGUCCGggCgGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 63715 0.67 0.54818
Target:  5'- gGCCGGGUGguugauggugCGGGCCacauagGCgCGGCGCg -3'
miRNA:   3'- gCGGCUCGCa---------GUCCGGg-----CG-GCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 65021 0.71 0.324676
Target:  5'- aCGCCGuGUG-CAGGCCCugcauGCCaAUGCCc -3'
miRNA:   3'- -GCGGCuCGCaGUCCGGG-----CGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 66618 0.69 0.440532
Target:  5'- aGCaUGAGCG-CGGGCUCGCgguCGACGgCg -3'
miRNA:   3'- gCG-GCUCGCaGUCCGGGCG---GCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 66782 0.66 0.624324
Target:  5'- gGCCGcGGaaUCGGaGUCgGCCGACGCg -3'
miRNA:   3'- gCGGC-UCgcAGUC-CGGgCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 66820 0.72 0.297866
Target:  5'- uCGCgGAGCcc--GGCCCgguGCCGGCGCCc -3'
miRNA:   3'- -GCGgCUCGcaguCCGGG---CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 67310 0.71 0.338026
Target:  5'- cCGCCGAGCGccacgacggcgguUCGGccaucCCCGCCGGCuGCg -3'
miRNA:   3'- -GCGGCUCGC-------------AGUCc----GGGCGGCUG-CGg -5'
5145 5' -63.7 NC_001798.1 + 68201 0.69 0.44992
Target:  5'- cCGUCGucaauagacgaucacGCG-CAGGCCCGCCacccCGCCg -3'
miRNA:   3'- -GCGGCu--------------CGCaGUCCGGGCGGcu--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.