miRNA display CGI


Results 41 - 60 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 135022 0.71 0.317809
Target:  5'- uGCCcccGCGggCAuGGCCgGCCGugGCCu -3'
miRNA:   3'- gCGGcu-CGCa-GU-CCGGgCGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 134982 0.7 0.399318
Target:  5'- uGCCuGGGgGcCuGGCCCGCggugGGCGCCa -3'
miRNA:   3'- gCGG-CUCgCaGuCCGGGCGg---CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 134728 0.67 0.511141
Target:  5'- aGCCcGGCGaCGGGUucuCCGCCccGGCGCUg -3'
miRNA:   3'- gCGGcUCGCaGUCCG---GGCGG--CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 134453 0.67 0.566073
Target:  5'- uCGCCGAGCaccccggcgcgcgGUUggcguGGGCgCGCCuGGcCGCCa -3'
miRNA:   3'- -GCGGCUCG-------------CAG-----UCCGgGCGG-CU-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 134352 0.77 0.135451
Target:  5'- gGUCGAaaggGCGUCgugGGGCCCGCCGgccgcuccucGCGCCg -3'
miRNA:   3'- gCGGCU----CGCAG---UCCGGGCGGC----------UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 134157 0.66 0.614724
Target:  5'- gGCCcccgGGGcCGUCGcGG-CCGCCcGCGCCg -3'
miRNA:   3'- gCGG----CUC-GCAGU-CCgGGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 133019 0.67 0.538833
Target:  5'- gGCCGGaCGUCGcGCCgGCCGAgGUg -3'
miRNA:   3'- gCGGCUcGCAGUcCGGgCGGCUgCGg -5'
5145 5' -63.7 NC_001798.1 + 132145 0.66 0.59461
Target:  5'- cCGCCGGGgGccggCGGGCggggCGCCccccccgGACGCCc -3'
miRNA:   3'- -GCGGCUCgCa---GUCCGg---GCGG-------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 131903 0.66 0.585066
Target:  5'- uCGCCGAcgaugcaGCaGcUGGGCCgCGUCGACGCg -3'
miRNA:   3'- -GCGGCU-------CG-CaGUCCGG-GCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 131332 0.69 0.407362
Target:  5'- aCGCCGcccGCGcccCGGGCgcgaCGUCGGCGCCc -3'
miRNA:   3'- -GCGGCu--CGCa--GUCCGg---GCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 130795 0.67 0.557577
Target:  5'- gCGCCGGGUcaaUCAGGCCgugaacCUGACGCa -3'
miRNA:   3'- -GCGGCUCGc--AGUCCGGgc----GGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 130238 0.69 0.449062
Target:  5'- aGcCCGGGUcUCcgggcGGCCCGCC-ACGCCu -3'
miRNA:   3'- gC-GGCUCGcAGu----CCGGGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 129684 0.67 0.52031
Target:  5'- -cCCGGGCGcCgGGGCCCcaguaCCGGCGCg -3'
miRNA:   3'- gcGGCUCGCaG-UCCGGGc----GGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 129344 0.72 0.297866
Target:  5'- cCGCgGAGCGcccgcCGGGCCUGgCGGgGCCc -3'
miRNA:   3'- -GCGgCUCGCa----GUCCGGGCgGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 128949 0.67 0.511141
Target:  5'- gCGcCCGGGCGcguucCGGGCCCGgaggaGGCGCUc -3'
miRNA:   3'- -GC-GGCUCGCa----GUCCGGGCgg---CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 128587 0.75 0.180535
Target:  5'- gGCCGcGCGgacgCGGGCgucaacgacgaCGCCGACGCCg -3'
miRNA:   3'- gCGGCuCGCa---GUCCGg----------GCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 127947 0.68 0.502041
Target:  5'- -cCCGGGCGaaaAGGCCCGgCCcGCGUCc -3'
miRNA:   3'- gcGGCUCGCag-UCCGGGC-GGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 126406 0.67 0.54818
Target:  5'- uCGCCGcuCGUCccccgAGGCCC-CCGGC-CCu -3'
miRNA:   3'- -GCGGCucGCAG-----UCCGGGcGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 126262 0.71 0.319174
Target:  5'- cCGCCGGGCGUCcggacgcccaagcGGCCCcuccccccgagaCGGCGCCg -3'
miRNA:   3'- -GCGGCUCGCAGu------------CCGGGcg----------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 125737 0.69 0.432095
Target:  5'- aGCCGAGaCGcCGccacgcGGCCCugcGCCGACGUUu -3'
miRNA:   3'- gCGGCUC-GCaGU------CCGGG---CGGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.