miRNA display CGI


Results 81 - 100 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 109713 0.75 0.193722
Target:  5'- gGCCGAGCaG-CGGgaacgcGCCCGCCGGgGCCu -3'
miRNA:   3'- gCGGCUCG-CaGUC------CGGGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 109624 0.67 0.553812
Target:  5'- gGCCGcGCG-CuaaccgccccgauGGUCCGCCGAgCGCUg -3'
miRNA:   3'- gCGGCuCGCaGu------------CCGGGCGGCU-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 109575 0.75 0.198302
Target:  5'- -cCCGAGCG-C-GGCCCGCCugaucGACGCCc -3'
miRNA:   3'- gcGGCUCGCaGuCCGGGCGG-----CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 109047 0.67 0.538833
Target:  5'- gGCCGGccccagguaucGCGUCuuuguccugGGGgCC-CCGACGCCc -3'
miRNA:   3'- gCGGCU-----------CGCAG---------UCCgGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 108836 0.66 0.595566
Target:  5'- gGCCcguGGGCGUCuggacgacgggcGGGCUgGCguucgggugCGACGCCg -3'
miRNA:   3'- gCGG---CUCGCAG------------UCCGGgCG---------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 108563 0.66 0.602263
Target:  5'- gCGCUGuuGCGguccCGGGCCUggguaacauucgcgGCCG-CGCCg -3'
miRNA:   3'- -GCGGCu-CGCa---GUCCGGG--------------CGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 108245 0.71 0.345936
Target:  5'- -aCCGGGCGUCuguGGuugcccaacaCCC-CCGACGCCa -3'
miRNA:   3'- gcGGCUCGCAGu--CC----------GGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 107640 0.66 0.614724
Target:  5'- cCGUCGGGUGUCGagacGCCCuGuuG-CGCCu -3'
miRNA:   3'- -GCGGCUCGCAGUc---CGGG-CggCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 107280 0.67 0.511141
Target:  5'- aCGCCGAcCGcCuGGCCagaCGCCaACGCCc -3'
miRNA:   3'- -GCGGCUcGCaGuCCGG---GCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 106688 0.69 0.440532
Target:  5'- uGCuCGuGCGagCGGGCCUaCCGACgGCCg -3'
miRNA:   3'- gCG-GCuCGCa-GUCCGGGcGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 103716 0.71 0.338739
Target:  5'- cCGCCGuuguuGCGU---GUCCGCCGACGUCc -3'
miRNA:   3'- -GCGGCu----CGCAgucCGGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 103589 0.66 0.614724
Target:  5'- cCGCUc-GCG-CAuuUCCGCCGACGCCa -3'
miRNA:   3'- -GCGGcuCGCaGUccGGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 103268 0.68 0.457682
Target:  5'- aCGCUccucccgggaGAGCG-CGGGUCCGC-GGCGCUc -3'
miRNA:   3'- -GCGG----------CUCGCaGUCCGGGCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 102999 0.66 0.595566
Target:  5'- aCGCCGGGgGccCAGGUgCGCCcg-GCCa -3'
miRNA:   3'- -GCGGCUCgCa-GUCCGgGCGGcugCGG- -5'
5145 5' -63.7 NC_001798.1 + 102891 0.69 0.407362
Target:  5'- uGUCcGGCGaUCccGGCCUGCCGcCGCCg -3'
miRNA:   3'- gCGGcUCGC-AGu-CCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 102643 0.74 0.202976
Target:  5'- uCGCCGGGCGgcggagGGGCCggggCGcCCGAUGCCg -3'
miRNA:   3'- -GCGGCUCGCag----UCCGG----GC-GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 102511 0.67 0.546306
Target:  5'- gCGCCgGGGUGUCcguAGGCCaccguccccgcgGCCGGCagGCCg -3'
miRNA:   3'- -GCGG-CUCGCAG---UCCGGg-----------CGGCUG--CGG- -5'
5145 5' -63.7 NC_001798.1 + 101774 0.7 0.360653
Target:  5'- gCGCUGcuGGCGUUaacuaAGGCCCGgCCuccGCGCCg -3'
miRNA:   3'- -GCGGC--UCGCAG-----UCCGGGC-GGc--UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 100668 0.67 0.557577
Target:  5'- uGCCGAcauCGaCAcGGUCauccgCGCCGACGCCa -3'
miRNA:   3'- gCGGCUc--GCaGU-CCGG-----GCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 100412 0.66 0.595566
Target:  5'- aGCCGuGCaccgUGGGCCa-CCGGCGCUa -3'
miRNA:   3'- gCGGCuCGca--GUCCGGgcGGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.