miRNA display CGI


Results 101 - 120 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 98838 0.66 0.585066
Target:  5'- aCGCCGAuGCc-CAGuuuuacguguGCCCGCCcccgacgGGCGCCa -3'
miRNA:   3'- -GCGGCU-CGcaGUC----------CGGGCGG-------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 98579 0.67 0.538833
Target:  5'- gGCCGcgguGGCGUCGGcGgCC-CCGGCgGCCc -3'
miRNA:   3'- gCGGC----UCGCAGUC-CgGGcGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 97642 0.66 0.614724
Target:  5'- cCGCCGcGGaCGUgCGGGagCGCCGGCGgCu -3'
miRNA:   3'- -GCGGC-UC-GCA-GUCCggGCGGCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 97198 0.67 0.538833
Target:  5'- aGCgCGAGCugcagCAGGagaCCGCCgcgGugGCCg -3'
miRNA:   3'- gCG-GCUCGca---GUCCg--GGCGG---CugCGG- -5'
5145 5' -63.7 NC_001798.1 + 97131 0.68 0.493012
Target:  5'- gCGUCcGGCGaUCGcGCCCGCCacuccaccaugGACGCCu -3'
miRNA:   3'- -GCGGcUCGC-AGUcCGGGCGG-----------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 96984 0.71 0.331653
Target:  5'- gCGgCGGGCGgCGgggccagggccGGCCCGCCGccCGCCg -3'
miRNA:   3'- -GCgGCUCGCaGU-----------CCGGGCGGCu-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 96916 0.72 0.26681
Target:  5'- cCGCCGGGCuGUCGGacgccGCCCGCgCGcgaGCGCUc -3'
miRNA:   3'- -GCGGCUCG-CAGUC-----CGGGCG-GC---UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 96049 0.67 0.528616
Target:  5'- gCGaCGGGCauaaagaggggauGUCagGGGCCCGCCGcCGCa -3'
miRNA:   3'- -GCgGCUCG-------------CAG--UCCGGGCGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 95524 0.66 0.586019
Target:  5'- gCGCCcugGAGCG-CGGGCauggcgaguggUCGaCCGACGCg -3'
miRNA:   3'- -GCGG---CUCGCaGUCCG-----------GGC-GGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 95007 0.72 0.291438
Target:  5'- cCGCaGGGCGgcgCGGGCCUggagGCCGGgGCCc -3'
miRNA:   3'- -GCGgCUCGCa--GUCCGGG----CGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 93954 0.68 0.502041
Target:  5'- gGCCGAGC-UCgAGGCCCuGCaguaCGugGaCCa -3'
miRNA:   3'- gCGGCUCGcAG-UCCGGG-CG----GCugC-GG- -5'
5145 5' -63.7 NC_001798.1 + 93746 0.75 0.176737
Target:  5'- aCGCUGAuGCGgcugCGGGCCCGCCaccccaaguucgcgaGCGCCg -3'
miRNA:   3'- -GCGGCU-CGCa---GUCCGGGCGGc--------------UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 93282 0.73 0.263265
Target:  5'- gCGCCGucggGGCGUaccuggcgcgcgccgCGGGCCuCGUgGGCGCCa -3'
miRNA:   3'- -GCGGC----UCGCA---------------GUCCGG-GCGgCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 93105 0.68 0.463769
Target:  5'- aCGCCGGGaacaaGGGCCCGgCGggcggguuugagcaGCGCCu -3'
miRNA:   3'- -GCGGCUCgcag-UCCGGGCgGC--------------UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 92931 0.76 0.16815
Target:  5'- aGgCGGuCGUCGGGCCCgccGCCGugGCCc -3'
miRNA:   3'- gCgGCUcGCAGUCCGGG---CGGCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 92402 0.74 0.207745
Target:  5'- gGCCGcGGuCGUCGGGuCCCGCaCGACggGCCu -3'
miRNA:   3'- gCGGC-UC-GCAGUCC-GGGCG-GCUG--CGG- -5'
5145 5' -63.7 NC_001798.1 + 92165 0.66 0.614724
Target:  5'- uGCCGGGCcccCGuuCCUGCCGGuCGCCg -3'
miRNA:   3'- gCGGCUCGca-GUccGGGCGGCU-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 91804 0.73 0.233061
Target:  5'- gCGCgGGGCGUgGGGaCCGugggcggggcCCGACGCCg -3'
miRNA:   3'- -GCGgCUCGCAgUCCgGGC----------GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 90675 0.66 0.595566
Target:  5'- aCGCCcccGGCGacucgcgCAGGgCCGCCGccagGCGCUc -3'
miRNA:   3'- -GCGGc--UCGCa------GUCCgGGCGGC----UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 89664 0.69 0.415508
Target:  5'- uCGCCGAucaccccgcgcuGCG-CGGGCCCGgaGGCGUa -3'
miRNA:   3'- -GCGGCU------------CGCaGUCCGGGCggCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.