miRNA display CGI


Results 121 - 140 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 89426 0.69 0.407362
Target:  5'- gGCCGGGCGcUUGGGCgCCuccuuGUCGAgGCCc -3'
miRNA:   3'- gCGGCUCGC-AGUCCG-GG-----CGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 88660 0.66 0.624324
Target:  5'- uCGCCcauGGCcacCAGGCCCGCggccgUGAgGCCg -3'
miRNA:   3'- -GCGGc--UCGca-GUCCGGGCG-----GCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 88052 0.66 0.586019
Target:  5'- cCGCUGGGgGggCGGGCUCGUccccuggggcggCGGCGUCu -3'
miRNA:   3'- -GCGGCUCgCa-GUCCGGGCG------------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 87720 0.72 0.278908
Target:  5'- cCGCCGuAGCGcCGGccCCCGCCGGC-CCg -3'
miRNA:   3'- -GCGGC-UCGCaGUCc-GGGCGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 86915 0.7 0.391375
Target:  5'- gCGCCGGGCcUCccgcaAGaGCCUGCCGuCGCa -3'
miRNA:   3'- -GCGGCUCGcAG-----UC-CGGGCGGCuGCGg -5'
5145 5' -63.7 NC_001798.1 + 86200 0.69 0.413054
Target:  5'- uCGCCGAGCcccagccccagCccgaccuggaccuGGGCCCGCUGAUgGCCa -3'
miRNA:   3'- -GCGGCUCGca---------G-------------UCCGGGCGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 86104 0.71 0.311052
Target:  5'- gCGCCGccGCGgac-GCCCGCCG-CGCCg -3'
miRNA:   3'- -GCGGCu-CGCagucCGGGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 85685 0.72 0.284492
Target:  5'- uGcCCGGGCGcCAcGCCCagaagcaacccagGCCGACGCCc -3'
miRNA:   3'- gC-GGCUCGCaGUcCGGG-------------CGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 85298 0.66 0.595566
Target:  5'- gGCCGGG-GUCcgcccgcGGCCCGCCcgcaGACcCCa -3'
miRNA:   3'- gCGGCUCgCAGu------CCGGGCGG----CUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 84758 0.72 0.304404
Target:  5'- cCGUCGGGCGcuuuuaUAGGCCCGgCGuACGUCa -3'
miRNA:   3'- -GCGGCUCGCa-----GUCCGGGCgGC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 84108 0.78 0.122881
Target:  5'- gGCCGGGCGUcCAGGCCgaggCGCCccuuGACGUCg -3'
miRNA:   3'- gCGGCUCGCA-GUCCGG----GCGG----CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 83969 0.67 0.557577
Target:  5'- gCGaCGGGCGa-GGGCCUGCuCGGCGgCg -3'
miRNA:   3'- -GCgGCUCGCagUCCGGGCG-GCUGCgG- -5'
5145 5' -63.7 NC_001798.1 + 83889 0.66 0.624324
Target:  5'- gGcCCGGGCGcUCcggaagaguGGUgCGCCGcCGCCa -3'
miRNA:   3'- gC-GGCUCGC-AGu--------CCGgGCGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 83849 0.72 0.297866
Target:  5'- cCGuCCGGGCGgcgcuggCGGGCCCGaggCGGCGaCCc -3'
miRNA:   3'- -GC-GGCUCGCa------GUCCGGGCg--GCUGC-GG- -5'
5145 5' -63.7 NC_001798.1 + 82071 0.67 0.529542
Target:  5'- gGCCccGCGgccGGCCCaccCCGGCGCCu -3'
miRNA:   3'- gCGGcuCGCaguCCGGGc--GGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 81728 0.76 0.160321
Target:  5'- uGCCGcGCGUgcgCAGGuCCCGCCGgACGCg -3'
miRNA:   3'- gCGGCuCGCA---GUCC-GGGCGGC-UGCGg -5'
5145 5' -63.7 NC_001798.1 + 81137 0.66 0.586019
Target:  5'- uCGCgCGGGCcauccUCGggcGGCCCuUCGACGCCu -3'
miRNA:   3'- -GCG-GCUCGc----AGU---CCGGGcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 80930 0.72 0.290165
Target:  5'- uCGCCGAGCGcccucucgccgaCGGGCCC-CCG-UGCCu -3'
miRNA:   3'- -GCGGCUCGCa-----------GUCCGGGcGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 80559 0.66 0.576502
Target:  5'- gGCgCGAgGCGUCccuccccgAGGCCC-CCcACGCCc -3'
miRNA:   3'- gCG-GCU-CGCAG--------UCCGGGcGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 80433 0.73 0.233061
Target:  5'- uGCCGAGCGcCGcuuuGGCCgCGCUGugGaCCu -3'
miRNA:   3'- gCGGCUCGCaGU----CCGG-GCGGCugC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.