miRNA display CGI


Results 41 - 60 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 140202 0.66 0.624324
Target:  5'- gGCCGGugcugguguGCGUgGGG-UCGCCGAC-CCa -3'
miRNA:   3'- gCGGCU---------CGCAgUCCgGGCGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 24552 0.66 0.624324
Target:  5'- gCGCCG-GCGgugguGGCggCgGCCGGCGCg -3'
miRNA:   3'- -GCGGCuCGCagu--CCG--GgCGGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 54855 0.66 0.624324
Target:  5'- cCGCCGc-CGcCuGGCCgGCCGAaaGCCa -3'
miRNA:   3'- -GCGGCucGCaGuCCGGgCGGCUg-CGG- -5'
5145 5' -63.7 NC_001798.1 + 78017 0.66 0.624324
Target:  5'- aCGCCGAcauGUuUCGGGUCgaCGCCGA-GCCc -3'
miRNA:   3'- -GCGGCU---CGcAGUCCGG--GCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 88660 0.66 0.624324
Target:  5'- uCGCCcauGGCcacCAGGCCCGCggccgUGAgGCCg -3'
miRNA:   3'- -GCGGc--UCGca-GUCCGGGCG-----GCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 103589 0.66 0.614724
Target:  5'- cCGCUc-GCG-CAuuUCCGCCGACGCCa -3'
miRNA:   3'- -GCGGcuCGCaGUccGGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 92165 0.66 0.614724
Target:  5'- uGCCGGGCcccCGuuCCUGCCGGuCGCCg -3'
miRNA:   3'- gCGGCUCGca-GUccGGGCGGCU-GCGG- -5'
5145 5' -63.7 NC_001798.1 + 153314 0.66 0.595566
Target:  5'- gGCuCGGGC-UCGGGCCCGagcuCGG-GCCu -3'
miRNA:   3'- gCG-GCUCGcAGUCCGGGCg---GCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 1338 0.66 0.595566
Target:  5'- cCGCCGcggcccGCG-CAGcUCCGCCGGgcCGCCg -3'
miRNA:   3'- -GCGGCu-----CGCaGUCcGGGCGGCU--GCGG- -5'
5145 5' -63.7 NC_001798.1 + 90675 0.66 0.595566
Target:  5'- aCGCCcccGGCGacucgcgCAGGgCCGCCGccagGCGCUc -3'
miRNA:   3'- -GCGGc--UCGCa------GUCCgGGCGGC----UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 108563 0.66 0.602263
Target:  5'- gCGCUGuuGCGguccCGGGCCUggguaacauucgcgGCCG-CGCCg -3'
miRNA:   3'- -GCGGCu-CGCa---GUCCGGG--------------CGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 1507 0.66 0.605136
Target:  5'- -nCCGAgGCGgc-GGCCCgGCCGuccaGCGCCg -3'
miRNA:   3'- gcGGCU-CGCaguCCGGG-CGGC----UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 41178 0.66 0.605136
Target:  5'- gGCCG-GCGUaguucaaaagaUAGG-UCGCCGGgGCCa -3'
miRNA:   3'- gCGGCuCGCA-----------GUCCgGGCGGCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 116706 0.66 0.605136
Target:  5'- gCGUCGu-CGUCgacGGGCCCGCC-AUGCUc -3'
miRNA:   3'- -GCGGCucGCAG---UCCGGGCGGcUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 124021 0.66 0.605136
Target:  5'- -cCCGGGCaGcCGGGCCCGCCauuuaggauGGCuGCUa -3'
miRNA:   3'- gcGGCUCG-CaGUCCGGGCGG---------CUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 153220 0.66 0.60897
Target:  5'- cCGcCCGA-CGgccCGGGCCCGCgGcggcggaggacccgcGCGCCg -3'
miRNA:   3'- -GC-GGCUcGCa--GUCCGGGCGgC---------------UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 43671 0.66 0.611846
Target:  5'- cCGCgGGGCuggggucgugggugGUCAcGGCCCGgagaugCGugGCCa -3'
miRNA:   3'- -GCGgCUCG--------------CAGU-CCGGGCg-----GCugCGG- -5'
5145 5' -63.7 NC_001798.1 + 117967 0.66 0.613765
Target:  5'- cCGCUGccAGCGacgugCAGuuuaagcGCCCGCCGGggUGCCg -3'
miRNA:   3'- -GCGGC--UCGCa----GUC-------CGGGCGGCU--GCGG- -5'
5145 5' -63.7 NC_001798.1 + 142197 0.66 0.614724
Target:  5'- gGUCGAGCGcgcCAGGaCCGCC--UGCCc -3'
miRNA:   3'- gCGGCUCGCa--GUCCgGGCGGcuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 53647 0.66 0.614724
Target:  5'- aCGCCGccGCGguggCGGGgUUGCgCGACGCg -3'
miRNA:   3'- -GCGGCu-CGCa---GUCCgGGCG-GCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.