miRNA display CGI


Results 81 - 100 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5145 5' -63.7 NC_001798.1 + 2877 0.66 0.586019
Target:  5'- cCGCCGGccacGCG-CAGGucCCCGCgcaGGCGCa -3'
miRNA:   3'- -GCGGCU----CGCaGUCC--GGGCGg--CUGCGg -5'
5145 5' -63.7 NC_001798.1 + 88052 0.66 0.586019
Target:  5'- cCGCUGGGgGggCGGGCUCGUccccuggggcggCGGCGUCu -3'
miRNA:   3'- -GCGGCUCgCa-GUCCGGGCG------------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 80217 0.66 0.586019
Target:  5'- uGCCGA-CGUUuuuggacggAGGCCCcCCGAC-CCg -3'
miRNA:   3'- gCGGCUcGCAG---------UCCGGGcGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 55769 0.66 0.586019
Target:  5'- gGCCGGcGCGcugCAG--CCGCCGACcGCCu -3'
miRNA:   3'- gCGGCU-CGCa--GUCcgGGCGGCUG-CGG- -5'
5145 5' -63.7 NC_001798.1 + 36637 0.66 0.586019
Target:  5'- gGCCGGGCGg-GGGCgCGCuuuccccgCGuCGCCc -3'
miRNA:   3'- gCGGCUCGCagUCCGgGCG--------GCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 53441 0.66 0.586019
Target:  5'- gGUgGAGCuGUCGggcGGCCagcugaGCCG-CGCCa -3'
miRNA:   3'- gCGgCUCG-CAGU---CCGGg-----CGGCuGCGG- -5'
5145 5' -63.7 NC_001798.1 + 98838 0.66 0.585066
Target:  5'- aCGCCGAuGCc-CAGuuuuacguguGCCCGCCcccgacgGGCGCCa -3'
miRNA:   3'- -GCGGCU-CGcaGUC----------CGGGCGG-------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 95524 0.66 0.586019
Target:  5'- gCGCCcugGAGCG-CGGGCauggcgaguggUCGaCCGACGCg -3'
miRNA:   3'- -GCGG---CUCGCaGUCCG-----------GGC-GGCUGCGg -5'
5145 5' -63.7 NC_001798.1 + 132145 0.66 0.59461
Target:  5'- cCGCCGGGgGccggCGGGCggggCGCCccccccgGACGCCc -3'
miRNA:   3'- -GCGGCUCgCa---GUCCGg---GCGG-------CUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 102999 0.66 0.595566
Target:  5'- aCGCCGGGgGccCAGGUgCGCCcg-GCCa -3'
miRNA:   3'- -GCGGCUCgCa-GUCCGgGCGGcugCGG- -5'
5145 5' -63.7 NC_001798.1 + 90675 0.66 0.595566
Target:  5'- aCGCCcccGGCGacucgcgCAGGgCCGCCGccagGCGCUc -3'
miRNA:   3'- -GCGGc--UCGCa------GUCCgGGCGGC----UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 1338 0.66 0.595566
Target:  5'- cCGCCGcggcccGCG-CAGcUCCGCCGGgcCGCCg -3'
miRNA:   3'- -GCGGCu-----CGCaGUCcGGGCGGCU--GCGG- -5'
5145 5' -63.7 NC_001798.1 + 153314 0.66 0.595566
Target:  5'- gGCuCGGGC-UCGGGCCCGagcuCGG-GCCu -3'
miRNA:   3'- gCG-GCUCGcAGUCCGGGCg---GCUgCGG- -5'
5145 5' -63.7 NC_001798.1 + 73217 0.66 0.595566
Target:  5'- gCGCCucGGCGUUucGGCcuuCCGCCGGC-CCg -3'
miRNA:   3'- -GCGGc-UCGCAGu-CCG---GGCGGCUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 150465 0.66 0.595566
Target:  5'- gGCCGcGCGg-GGGCgCGCgGcGCGCCc -3'
miRNA:   3'- gCGGCuCGCagUCCGgGCGgC-UGCGG- -5'
5145 5' -63.7 NC_001798.1 + 108836 0.66 0.595566
Target:  5'- gGCCcguGGGCGUCuggacgacgggcGGGCUgGCguucgggugCGACGCCg -3'
miRNA:   3'- gCGG---CUCGCAG------------UCCGGgCG---------GCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 100412 0.66 0.595566
Target:  5'- aGCCGuGCaccgUGGGCCa-CCGGCGCUa -3'
miRNA:   3'- gCGGCuCGca--GUCCGGgcGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 85298 0.66 0.595566
Target:  5'- gGCCGGG-GUCcgcccgcGGCCCGCCcgcaGACcCCa -3'
miRNA:   3'- gCGGCUCgCAGu------CCGGGCGG----CUGcGG- -5'
5145 5' -63.7 NC_001798.1 + 80284 0.66 0.595566
Target:  5'- gCGCCGGGgcaagcUGUCcgaaaccGaCCCGCUGGCGCCc -3'
miRNA:   3'- -GCGGCUC------GCAGuc-----C-GGGCGGCUGCGG- -5'
5145 5' -63.7 NC_001798.1 + 72721 0.66 0.595566
Target:  5'- gGCCaucGUGUCGGGCauccaCGCCagGGCGUCa -3'
miRNA:   3'- gCGGcu-CGCAGUCCGg----GCGG--CUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.