miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5146 5' -53 NC_001798.1 + 98406 0.66 0.978265
Target:  5'- -gCUgCAUCGGAC-CccGCUCGGUCGUg -3'
miRNA:   3'- uaGA-GUAGUUUGuGccCGAGCCAGCG- -5'
5146 5' -53 NC_001798.1 + 11621 0.66 0.973144
Target:  5'- uAUCUCGcCGcuCGCGGGCgCGGgCGUc -3'
miRNA:   3'- -UAGAGUaGUuuGUGCCCGaGCCaGCG- -5'
5146 5' -53 NC_001798.1 + 59821 0.66 0.97028
Target:  5'- -cUUCuUCuu-CugGGGCgccgCGGUCGCc -3'
miRNA:   3'- uaGAGuAGuuuGugCCCGa---GCCAGCG- -5'
5146 5' -53 NC_001798.1 + 85833 0.66 0.97028
Target:  5'- ---gCGggggCGGGCGgGGGCUCGGgaaCGCa -3'
miRNA:   3'- uagaGUa---GUUUGUgCCCGAGCCa--GCG- -5'
5146 5' -53 NC_001798.1 + 5495 0.66 0.967203
Target:  5'- -cCUCGUCGcGgGCGGGCUCGcUCc- -3'
miRNA:   3'- uaGAGUAGUuUgUGCCCGAGCcAGcg -5'
5146 5' -53 NC_001798.1 + 53159 0.66 0.967203
Target:  5'- -cCUCAUCcgcggcgccAACGCGGGCguccccgagCGG-CGCa -3'
miRNA:   3'- uaGAGUAGu--------UUGUGCCCGa--------GCCaGCG- -5'
5146 5' -53 NC_001798.1 + 109890 0.67 0.952649
Target:  5'- gAUCUCGcCGAGgGCGGGUUCauccuGGaCGCg -3'
miRNA:   3'- -UAGAGUaGUUUgUGCCCGAG-----CCaGCG- -5'
5146 5' -53 NC_001798.1 + 20161 0.67 0.952649
Target:  5'- -gUUCAgacagggcagcUCGcACACGGGCUCGG-CGg -3'
miRNA:   3'- uaGAGU-----------AGUuUGUGCCCGAGCCaGCg -5'
5146 5' -53 NC_001798.1 + 119143 0.68 0.917908
Target:  5'- -cCUCcgUAAACACcGaGCUgCGGUCGCu -3'
miRNA:   3'- uaGAGuaGUUUGUGcC-CGA-GCCAGCG- -5'
5146 5' -53 NC_001798.1 + 59561 0.69 0.911951
Target:  5'- -------gGGGCugGGGCUCGcGUCGCc -3'
miRNA:   3'- uagaguagUUUGugCCCGAGC-CAGCG- -5'
5146 5' -53 NC_001798.1 + 142935 0.69 0.899299
Target:  5'- -aCUCGUguaCAAACACGGGgaCGGcCGg -3'
miRNA:   3'- uaGAGUA---GUUUGUGCCCgaGCCaGCg -5'
5146 5' -53 NC_001798.1 + 98104 0.69 0.892609
Target:  5'- -cUUCAUCAugGGCGCgggGGGUUCGGgCGCu -3'
miRNA:   3'- uaGAGUAGU--UUGUG---CCCGAGCCaGCG- -5'
5146 5' -53 NC_001798.1 + 63980 0.7 0.878518
Target:  5'- -cCUCGUCccccacGAACACGaGCUCGGUCu- -3'
miRNA:   3'- uaGAGUAG------UUUGUGCcCGAGCCAGcg -5'
5146 5' -53 NC_001798.1 + 66613 0.7 0.878518
Target:  5'- -aCUCcagCAugAGCGCGGGCUcgCGGUCGa -3'
miRNA:   3'- uaGAGua-GU--UUGUGCCCGA--GCCAGCg -5'
5146 5' -53 NC_001798.1 + 15676 0.7 0.868864
Target:  5'- cAUCUCGUCGGggggaguagugguuGCGgGGGCggUCGGUucCGCg -3'
miRNA:   3'- -UAGAGUAGUU--------------UGUgCCCG--AGCCA--GCG- -5'
5146 5' -53 NC_001798.1 + 153298 0.7 0.855677
Target:  5'- cGUCUUcgUggGCcCGGGCUCGGgcUCGg -3'
miRNA:   3'- -UAGAGuaGuuUGuGCCCGAGCC--AGCg -5'
5146 5' -53 NC_001798.1 + 22230 0.7 0.839385
Target:  5'- gGUCUCAUUAGcauCGCGGGCggaagCGGaaGCc -3'
miRNA:   3'- -UAGAGUAGUUu--GUGCCCGa----GCCagCG- -5'
5146 5' -53 NC_001798.1 + 9692 0.71 0.795358
Target:  5'- cUCUCAcgugCGGGCgggugggcucgACGGGCUCGGgcuggCGCu -3'
miRNA:   3'- uAGAGUa---GUUUG-----------UGCCCGAGCCa----GCG- -5'
5146 5' -53 NC_001798.1 + 2786 0.73 0.727546
Target:  5'- -gCUCAgCAGGCGCGGGCUccgCGGcagCGCc -3'
miRNA:   3'- uaGAGUaGUUUGUGCCCGA---GCCa--GCG- -5'
5146 5' -53 NC_001798.1 + 124751 1.09 0.005229
Target:  5'- gAUCUCAUCAAACACGGGCUCGGUCGCc -3'
miRNA:   3'- -UAGAGUAGUUUGUGCCCGAGCCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.