miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5147 5' -55.3 NC_001798.1 + 2979 0.66 0.936606
Target:  5'- uGCgg--CGGGGcgGCCGGCCcgcgggCCCCGGg -3'
miRNA:   3'- -CGauagGUCCUaaUGGCUGG------GGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 3022 0.68 0.869749
Target:  5'- gGCgggCCGGGcu--CCGGCCagCCCCGGc -3'
miRNA:   3'- -CGauaGGUCCuaauGGCUGG--GGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 3885 0.66 0.936606
Target:  5'- cGCgccCCGGGGgcgggggGCCGGCCCCgggccaCGGc -3'
miRNA:   3'- -CGauaGGUCCUaa-----UGGCUGGGGg-----GCC- -5'
5147 5' -55.3 NC_001798.1 + 4124 0.7 0.79635
Target:  5'- gGCUcggCCGGGGc-GCCG-CCCCCgGGg -3'
miRNA:   3'- -CGAua-GGUCCUaaUGGCuGGGGGgCC- -5'
5147 5' -55.3 NC_001798.1 + 5316 0.74 0.580604
Target:  5'- gGCUcgCCGGGGUU-CCG-CCCCCaGGu -3'
miRNA:   3'- -CGAuaGGUCCUAAuGGCuGGGGGgCC- -5'
5147 5' -55.3 NC_001798.1 + 7043 0.74 0.580604
Target:  5'- gGC-AUCCGGGGUUuccCCGGCCcacccccaaaCCCCGGu -3'
miRNA:   3'- -CGaUAGGUCCUAAu--GGCUGG----------GGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 7443 0.67 0.926521
Target:  5'- ----cCCAGGGa-GCCuaGACCCCCaCGGg -3'
miRNA:   3'- cgauaGGUCCUaaUGG--CUGGGGG-GCC- -5'
5147 5' -55.3 NC_001798.1 + 10715 0.66 0.938511
Target:  5'- gGC-AUCCAGGGguuCCGcgGCCCacaguaguuugugggCCCGGg -3'
miRNA:   3'- -CGaUAGGUCCUaauGGC--UGGG---------------GGGCC- -5'
5147 5' -55.3 NC_001798.1 + 12894 0.69 0.854736
Target:  5'- uGCUGguguaCGGGGgcuugggGCCGugCCaCCCGGc -3'
miRNA:   3'- -CGAUag---GUCCUaa-----UGGCugGG-GGGCC- -5'
5147 5' -55.3 NC_001798.1 + 16768 0.69 0.813876
Target:  5'- --gGUCCGGGGacacCCGACCcgccgcguguCCCCGGa -3'
miRNA:   3'- cgaUAGGUCCUaau-GGCUGG----------GGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 18302 0.67 0.926521
Target:  5'- uGCUcgCCGGGAagGCCGggGCCguguuuguCUCCGGc -3'
miRNA:   3'- -CGAuaGGUCCUaaUGGC--UGG--------GGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 18927 0.71 0.76339
Target:  5'- cGCUGUCCcccaaacaccacgacGGGccuguUUGCgaggaCGACCCCCUGGa -3'
miRNA:   3'- -CGAUAGG---------------UCCu----AAUG-----GCUGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 21067 0.67 0.926521
Target:  5'- uGUUGggaUCGGGGcc-CCGuCCCCCCGGc -3'
miRNA:   3'- -CGAUa--GGUCCUaauGGCuGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 21309 0.69 0.813876
Target:  5'- --cGUCCccccGGccccCCGGCCCCCCGGc -3'
miRNA:   3'- cgaUAGGu---CCuaauGGCUGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 21473 0.75 0.540868
Target:  5'- cGCccGUCCccccg-GCCGGCCCCCCGGg -3'
miRNA:   3'- -CGa-UAGGuccuaaUGGCUGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 21777 0.66 0.945762
Target:  5'- uGCg--CgAGGAacgGCCcGCCCCCCGu -3'
miRNA:   3'- -CGauaGgUCCUaa-UGGcUGGGGGGCc -5'
5147 5' -55.3 NC_001798.1 + 23811 0.72 0.681464
Target:  5'- ----cCCGGG---GCCGGCCCCCCGc -3'
miRNA:   3'- cgauaGGUCCuaaUGGCUGGGGGGCc -5'
5147 5' -55.3 NC_001798.1 + 25606 0.71 0.721145
Target:  5'- cGCg--CCGGGGgcggGCC--CCCCCCGGa -3'
miRNA:   3'- -CGauaGGUCCUaa--UGGcuGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 27685 0.69 0.838935
Target:  5'- ----cCCGGGG--GuuGACUCCCCGGg -3'
miRNA:   3'- cgauaGGUCCUaaUggCUGGGGGGCC- -5'
5147 5' -55.3 NC_001798.1 + 27931 0.7 0.79635
Target:  5'- cGCcg-CCGGGGUcccggcGCCGGCCgcgCCCCGGc -3'
miRNA:   3'- -CGauaGGUCCUAa-----UGGCUGG---GGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.