miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 5' -52 NC_001798.1 + 3351 0.66 0.983978
Target:  5'- cGUCGUCGCc---GUCGUggcgguugGCGUCGCc -3'
miRNA:   3'- -CAGCGGUGaaaaCAGCGa-------UGCAGCGc -5'
5148 5' -52 NC_001798.1 + 4605 0.67 0.969341
Target:  5'- --gGCCGCUUcuucUUG-CGCgcCGUCGCGc -3'
miRNA:   3'- cagCGGUGAA----AACaGCGauGCAGCGC- -5'
5148 5' -52 NC_001798.1 + 10435 0.69 0.932615
Target:  5'- -aCGCCACUUgg--CGCgccuCGUCGCu -3'
miRNA:   3'- caGCGGUGAAaacaGCGau--GCAGCGc -5'
5148 5' -52 NC_001798.1 + 25008 0.67 0.969341
Target:  5'- cGUCGCCGCggccgacUCGCU-CGcCGCGc -3'
miRNA:   3'- -CAGCGGUGaaaac--AGCGAuGCaGCGC- -5'
5148 5' -52 NC_001798.1 + 46973 0.68 0.961765
Target:  5'- --gGCCGCUggguggugcuguugUUcGUCGCgcuCGUCGCGg -3'
miRNA:   3'- cagCGGUGA--------------AAaCAGCGau-GCAGCGC- -5'
5148 5' -52 NC_001798.1 + 51938 0.66 0.98578
Target:  5'- -cCGCCGCcg-UGcCGCUGCucagCGCGg -3'
miRNA:   3'- caGCGGUGaaaACaGCGAUGca--GCGC- -5'
5148 5' -52 NC_001798.1 + 59835 0.66 0.988916
Target:  5'- -gCGCCGCg---GUCGCccGCGUC-CGg -3'
miRNA:   3'- caGCGGUGaaaaCAGCGa-UGCAGcGC- -5'
5148 5' -52 NC_001798.1 + 62552 0.68 0.959223
Target:  5'- -cCGCgGCUa-UGUCGCcggACGUCGCc -3'
miRNA:   3'- caGCGgUGAaaACAGCGa--UGCAGCGc -5'
5148 5' -52 NC_001798.1 + 79810 0.67 0.969341
Target:  5'- -cCGCCaACUUUcagcuguucgGUCGCUuCGUCGCc -3'
miRNA:   3'- caGCGG-UGAAAa---------CAGCGAuGCAGCGc -5'
5148 5' -52 NC_001798.1 + 92308 0.66 0.988916
Target:  5'- uGUCGCUACUgucggCGCgcagcgGCGaCGCGg -3'
miRNA:   3'- -CAGCGGUGAaaacaGCGa-----UGCaGCGC- -5'
5148 5' -52 NC_001798.1 + 93643 0.7 0.899734
Target:  5'- -gCGCCAggagauggacgUGuuUCGCUACGUCGCGg -3'
miRNA:   3'- caGCGGUgaaa-------AC--AGCGAUGCAGCGC- -5'
5148 5' -52 NC_001798.1 + 121665 1.08 0.008315
Target:  5'- uGUCGCCACUUUUGUCGCUACGUCGCGc -3'
miRNA:   3'- -CAGCGGUGAAAACAGCGAUGCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.