miRNA display CGI


Results 81 - 100 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 38475 0.67 0.636907
Target:  5'- uCCC----ACGCGCACGCcgGCAUCgCCCCg -3'
miRNA:   3'- -GGGcuccUGCGCGUGUG--CGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 134372 0.67 0.646566
Target:  5'- gCCCGccGGC-CGCuccuCGCGcCGCCCUCCu -3'
miRNA:   3'- -GGGCucCUGcGCGu---GUGC-GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 47057 0.67 0.655252
Target:  5'- aUCGGGGACGCGCaaugccgggGCGacaGCGCCggugugguguccgUCCCg -3'
miRNA:   3'- gGGCUCCUGCGCG---------UGUg--CGUGG-------------GGGG- -5'
5150 5' -61.9 NC_001798.1 + 24267 0.67 0.656216
Target:  5'- gCCUGc-GcCGCGCcUACGCGCCCCUg -3'
miRNA:   3'- -GGGCucCuGCGCGuGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 79507 0.67 0.669695
Target:  5'- gCCGGGGcgAgGCGUAUcuGCGCGCCggcggagacccggggCCCCu -3'
miRNA:   3'- gGGCUCC--UgCGCGUG--UGCGUGG---------------GGGG- -5'
5150 5' -61.9 NC_001798.1 + 32549 0.67 0.669695
Target:  5'- -aCGGGGAacguggcggaccugcUGCGgGC-CGCGgCCCCCg -3'
miRNA:   3'- ggGCUCCU---------------GCGCgUGuGCGUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 25184 0.67 0.665849
Target:  5'- cCCCGccGACGcCGCcgccgcggccGC-CGCGCCCCgCg -3'
miRNA:   3'- -GGGCucCUGC-GCG----------UGuGCGUGGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 145893 0.67 0.665849
Target:  5'- cCCCGAc--CGC-CGC-CGCGCCCCaCCg -3'
miRNA:   3'- -GGGCUccuGCGcGUGuGCGUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 142638 0.67 0.665849
Target:  5'- aCCCu-GGACGaCGCAgACcCAaCCCCCg -3'
miRNA:   3'- -GGGcuCCUGC-GCGUgUGcGUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 125254 0.67 0.665849
Target:  5'- gUUGGGGcACgGCGUccuccgGCGCGCACUCCCg -3'
miRNA:   3'- gGGCUCC-UG-CGCG------UGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 65821 0.67 0.665849
Target:  5'- -gCGAGGAUgGCGCuCACGUugCCggugauggCCCg -3'
miRNA:   3'- ggGCUCCUG-CGCGuGUGCGugGG--------GGG- -5'
5150 5' -61.9 NC_001798.1 + 50713 0.67 0.665849
Target:  5'- gCCCGcGGGucuGCGUGgGgACGaggccCACCCCCCc -3'
miRNA:   3'- -GGGC-UCC---UGCGCgUgUGC-----GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 118387 0.67 0.665849
Target:  5'- aCCUGGGGcuccUGCGCACGacaG-ACCuCCCCg -3'
miRNA:   3'- -GGGCUCCu---GCGCGUGUg--CgUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 109073 0.67 0.664886
Target:  5'- uCCUGGGGGCcccgacgcccGCcgacaacggcucgGCGCugGaCGCCCUCCg -3'
miRNA:   3'- -GGGCUCCUG----------CG-------------CGUGugC-GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 39792 0.67 0.660071
Target:  5'- uCCCGAGG-CGCGacCACACGCcgguggucgcgggugGCggaucgucggcUCCCCg -3'
miRNA:   3'- -GGGCUCCuGCGC--GUGUGCG---------------UG-----------GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 129332 0.67 0.656216
Target:  5'- cCUgGAGGACG-GC-CGCggaGCGCCCgCCg -3'
miRNA:   3'- -GGgCUCCUGCgCGuGUG---CGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 93362 0.67 0.656216
Target:  5'- aCCGAGGugGaCGaCGC-CGgGCCggcggaCCCCa -3'
miRNA:   3'- gGGCUCCugC-GC-GUGuGCgUGG------GGGG- -5'
5150 5' -61.9 NC_001798.1 + 79143 0.67 0.656216
Target:  5'- gCCGuggaggagcuGGGCGCGCGCGucaccaaGCACaCCgCCCu -3'
miRNA:   3'- gGGCu---------CCUGCGCGUGUg------CGUG-GG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 111722 0.67 0.656216
Target:  5'- gCUGAcGGugGCcCGCuuggccccCGCGCCCCCg -3'
miRNA:   3'- gGGCU-CCugCGcGUGu-------GCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 44729 0.67 0.656216
Target:  5'- -gCGAGGAgGUGauaACGCACCCgUCg -3'
miRNA:   3'- ggGCUCCUgCGCgugUGCGUGGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.