miRNA display CGI


Results 41 - 60 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 85220 0.75 0.243418
Target:  5'- -aCGAGGACGUggagagcgacgucGCGCcCGC-CCCCCCg -3'
miRNA:   3'- ggGCUCCUGCG-------------CGUGuGCGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 122363 0.75 0.227779
Target:  5'- -gCGuGGGGCGgGCgACGCGCccGCCCCCCg -3'
miRNA:   3'- ggGC-UCCUGCgCG-UGUGCG--UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 47832 0.75 0.238471
Target:  5'- cCCCGGcccCGCGCGCGCuccucCACCCCCCg -3'
miRNA:   3'- -GGGCUccuGCGCGUGUGc----GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 142490 0.75 0.233073
Target:  5'- cCCCGAGGcgGCGCggggguGCGauaACGCACCCCUg -3'
miRNA:   3'- -GGGCUCC--UGCG------CGUg--UGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 32766 0.75 0.227255
Target:  5'- aCCCGuggucucgggagcAGGGCGCGCcCGCGCcggccggcgacGCCCCCg -3'
miRNA:   3'- -GGGC-------------UCCUGCGCGuGUGCG-----------UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 69306 0.75 0.232539
Target:  5'- gCCGGGGAcggucagcccuccCGCGCGC-CGgGCUCCCCu -3'
miRNA:   3'- gGGCUCCU-------------GCGCGUGuGCgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 92763 0.75 0.255293
Target:  5'- aUCGGGGACGCGgagguuCAC-CGCAUCCCCg -3'
miRNA:   3'- gGGCUCCUGCGC------GUGuGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 71113 0.74 0.272467
Target:  5'- cCCCGGGGACGCugaugGCGCGCGUgcggacggacgcgGCCgucuucgaCCCCg -3'
miRNA:   3'- -GGGCUCCUGCG-----CGUGUGCG-------------UGG--------GGGG- -5'
5150 5' -61.9 NC_001798.1 + 128028 0.74 0.273075
Target:  5'- gCCGGGGG-GCGCACACGcCAUCgaCCCg -3'
miRNA:   3'- gGGCUCCUgCGCGUGUGC-GUGGg-GGG- -5'
5150 5' -61.9 NC_001798.1 + 149243 0.74 0.291838
Target:  5'- cCCgCGGGGGCgucgccggccgGCGCGgGCGCGCCCugcuCCCg -3'
miRNA:   3'- -GG-GCUCCUG-----------CGCGUgUGCGUGGG----GGG- -5'
5150 5' -61.9 NC_001798.1 + 54611 0.74 0.285474
Target:  5'- gCCGGGGcgccccCGCGCcucccgccccGCAacccCGCGCCCCCCg -3'
miRNA:   3'- gGGCUCCu-----GCGCG----------UGU----GCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 17715 0.74 0.261112
Target:  5'- cCUCGuGGcuCGUGCugGCGUACCaCCCCg -3'
miRNA:   3'- -GGGCuCCu-GCGCGugUGCGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 107461 0.74 0.273075
Target:  5'- cCCCGAGGACG-GCGCGgGguCUcugCCCCg -3'
miRNA:   3'- -GGGCUCCUGCgCGUGUgCguGG---GGGG- -5'
5150 5' -61.9 NC_001798.1 + 24482 0.74 0.26704
Target:  5'- gCCCuGGGGCGCcugaGCGC-CGCGCCCgCCu -3'
miRNA:   3'- -GGGcUCCUGCG----CGUGuGCGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 52038 0.74 0.291196
Target:  5'- gCCCGGGGuGCGCGCGCuccugggGCGCgacugucgcgugGCCgCCCg -3'
miRNA:   3'- -GGGCUCC-UGCGCGUG-------UGCG------------UGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 62289 0.74 0.285474
Target:  5'- gCCCGGcGGGaGCGCGCcaacuCGCGCUCCCUg -3'
miRNA:   3'- -GGGCU-CCUgCGCGUGu----GCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 51157 0.74 0.2786
Target:  5'- cCCCGGGucccGACGCGCguccgaggcccggGCgGCgGCGCCCCCCc -3'
miRNA:   3'- -GGGCUC----CUGCGCG-------------UG-UG-CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 9608 0.73 0.305562
Target:  5'- gCCCGAGGGCG-GCcaGCAacagggccgcccccaGCACCgCCCCg -3'
miRNA:   3'- -GGGCUCCUGCgCG--UGUg--------------CGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 97839 0.73 0.296358
Target:  5'- cCCUGAcggcGGGCGCGgGCAcggucaucgacaacCGCGCCgCCCCg -3'
miRNA:   3'- -GGGCU----CCUGCGCgUGU--------------GCGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 128290 0.73 0.298312
Target:  5'- cUCUGGcgccuGACGCGC-CGCGC-CCCCCCg -3'
miRNA:   3'- -GGGCUc----CUGCGCGuGUGCGuGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.