miRNA display CGI


Results 81 - 100 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 145436 0.72 0.364592
Target:  5'- cCCCGcccGGccgcCGCGCGCccccgcccggccgccGCGCGCCCCCg -3'
miRNA:   3'- -GGGCu--CCu---GCGCGUG---------------UGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 145499 0.72 0.364592
Target:  5'- cCCCGcccGGccgcCGCGCGCccccgcccggccgccGCGCGCCCCCg -3'
miRNA:   3'- -GGGCu--CCu---GCGCGUG---------------UGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 25597 0.72 0.354102
Target:  5'- gCCGcGGGC-CGCGCcggggGCGgGCCCCCCc -3'
miRNA:   3'- gGGCuCCUGcGCGUG-----UGCgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 25146 0.72 0.346741
Target:  5'- cCCCGcGGccgccccucccGCGgGgGC-CGCGCCCCCCg -3'
miRNA:   3'- -GGGCuCC-----------UGCgCgUGuGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 44161 0.72 0.369153
Target:  5'- gCCCGGcGGuACGCccccaGCACGCGCGCCUCg- -3'
miRNA:   3'- -GGGCU-CC-UGCG-----CGUGUGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 73003 0.72 0.376841
Target:  5'- aCCGAGGACGCGCcccccagcccgGC-CGCAgaCCUCg -3'
miRNA:   3'- gGGCUCCUGCGCG-----------UGuGCGUggGGGG- -5'
5150 5' -61.9 NC_001798.1 + 23575 0.72 0.384636
Target:  5'- cCCCGGGGGCgGCGCcccgGC-CGaGCCCgCCCa -3'
miRNA:   3'- -GGGCUCCUG-CGCG----UGuGCgUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 23830 0.72 0.379946
Target:  5'- cCCCG-GGGCGCGUGCuguacggcgggcuggGCGacaGCCgCCCCg -3'
miRNA:   3'- -GGGCuCCUGCGCGUG---------------UGCg--UGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 96094 0.72 0.346741
Target:  5'- gUCCGcgcGGGGCGCGccuCugACcCACCCCCCc -3'
miRNA:   3'- -GGGC---UCCUGCGC---GugUGcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 108484 0.72 0.384636
Target:  5'- cCCCGAGG-CgGgGCcCACGUcccguCCCCCCg -3'
miRNA:   3'- -GGGCUCCuG-CgCGuGUGCGu----GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 133446 0.72 0.376067
Target:  5'- gUCgGAGGACGCGguUaagcgcguggccgACGCccugagcggcuGCCCCCCg -3'
miRNA:   3'- -GGgCUCCUGCGCguG-------------UGCG-----------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 26444 0.72 0.384636
Target:  5'- gCgCGAcGACGCGgACGCGgGCCCgCCCc -3'
miRNA:   3'- -GgGCUcCUGCGCgUGUGCgUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 62226 0.72 0.369153
Target:  5'- gUCGAGGACGUGC-UGCGCgagugucacuggACCgCCCCg -3'
miRNA:   3'- gGGCUCCUGCGCGuGUGCG------------UGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 52247 0.72 0.376841
Target:  5'- uCgUGGGGGCGCGCcuGCAccCGCACuCCgCCCa -3'
miRNA:   3'- -GgGCUCCUGCGCG--UGU--GCGUG-GG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 148506 0.72 0.376841
Target:  5'- cCCCGGGGGCagaggGCGUGCAUGCguugugauucaACCgCCCu -3'
miRNA:   3'- -GGGCUCCUG-----CGCGUGUGCG-----------UGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 25047 0.72 0.384636
Target:  5'- gCCGcGGGAgGCGCGCAaGCGCaagagCCCCg -3'
miRNA:   3'- gGGC-UCCUgCGCGUGUgCGUGg----GGGG- -5'
5150 5' -61.9 NC_001798.1 + 53041 0.72 0.384636
Target:  5'- uCCCG-GGACGCgGCAUaccuccgaccgGCGgGgCCCCCg -3'
miRNA:   3'- -GGGCuCCUGCG-CGUG-----------UGCgUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 61850 0.72 0.372215
Target:  5'- aCCGGGGaACGCGgGC-CGCcggcccagcccggcgGCCCCCUc -3'
miRNA:   3'- gGGCUCC-UGCGCgUGuGCG---------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 35318 0.72 0.36007
Target:  5'- cUCCGGGcacGGCGCccgcaaccgcagaGCACucagcugGCGCGCCCCCCc -3'
miRNA:   3'- -GGGCUC---CUGCG-------------CGUG-------UGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 85931 0.72 0.376841
Target:  5'- gCgCGGGGGCGgagacagcugcUGCACGCGCGCCgCCg -3'
miRNA:   3'- -GgGCUCCUGC-----------GCGUGUGCGUGGgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.