miRNA display CGI


Results 61 - 80 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 9608 0.73 0.305562
Target:  5'- gCCCGAGGGCG-GCcaGCAacagggccgcccccaGCACCgCCCCg -3'
miRNA:   3'- -GGGCUCCUGCgCG--UGUg--------------CGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 70325 0.73 0.311594
Target:  5'- gCCCGGcGGAgGCGCgggcguGCugGCACCCgCUCc -3'
miRNA:   3'- -GGGCU-CCUgCGCG------UGugCGUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 25424 0.73 0.311594
Target:  5'- cCUCGcuGGcCGCGCGCuGCGCcgccccGCCCCCCg -3'
miRNA:   3'- -GGGCu-CCuGCGCGUG-UGCG------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 71846 0.73 0.311594
Target:  5'- cCCCGucGGGCGCcuaGC-CACGC-CCCCUCg -3'
miRNA:   3'- -GGGCu-CCUGCG---CGuGUGCGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 32055 0.73 0.311594
Target:  5'- cCCCGGcGucCGCGgGCGcCGCGCCCCCg -3'
miRNA:   3'- -GGGCU-CcuGCGCgUGU-GCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 3796 0.73 0.314303
Target:  5'- gCCCGAGGccucgaaccgggccCGCGCcuccuccgccuCGgGCGCCCCCCa -3'
miRNA:   3'- -GGGCUCCu-------------GCGCGu----------GUgCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 30412 0.73 0.318401
Target:  5'- gCCUGAuGGACGCgGC-CACGCccccggcccgGCCCCCg -3'
miRNA:   3'- -GGGCU-CCUGCG-CGuGUGCG----------UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 81303 0.73 0.325319
Target:  5'- uCCCGAGGACcC-CGC-UGCcCCCCCCg -3'
miRNA:   3'- -GGGCUCCUGcGcGUGuGCGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 33723 0.73 0.325319
Target:  5'- aCCCGAGGcAUGCaacCGCACuCACCCCaCCc -3'
miRNA:   3'- -GGGCUCC-UGCGc--GUGUGcGUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 655 0.73 0.325319
Target:  5'- cCCCGcGGGCGCGgGagACGUGCCgCCCg -3'
miRNA:   3'- -GGGCuCCUGCGCgUg-UGCGUGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 48776 0.73 0.332349
Target:  5'- cCUCGGGGACGC--ACG-GCACCCCCg -3'
miRNA:   3'- -GGGCUCCUGCGcgUGUgCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 80547 0.73 0.332349
Target:  5'- gCCCGgcgGGGGgGCGCGagGCGUcccuccccgagGCCCCCCa -3'
miRNA:   3'- -GGGC---UCCUgCGCGUg-UGCG-----------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 154530 0.73 0.33949
Target:  5'- uCCCGcGGGCGCccccGCGCGgcuuuuuuccCGCGCCCgCCCc -3'
miRNA:   3'- -GGGCuCCUGCG----CGUGU----------GCGUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 78992 0.73 0.33949
Target:  5'- cCCCGAGGGguucCGCGCcaugcacgagcaGCuGCGCGCCCUgCa -3'
miRNA:   3'- -GGGCUCCU----GCGCG------------UG-UGCGUGGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 192 0.73 0.33949
Target:  5'- uCCCGcGGGCGCccccGCGCGgcuuuuuuccCGCGCCCgCCCc -3'
miRNA:   3'- -GGGCuCCUGCG----CGUGU----------GCGUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 146827 0.72 0.346741
Target:  5'- aCCGGGGGCGCGgcagcaacgaaCGCAgGgGCCCgCCg -3'
miRNA:   3'- gGGCUCCUGCGC-----------GUGUgCgUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 16189 0.72 0.346741
Target:  5'- aCCGGGGGgaCGCACGgGcCGCCCUCCg -3'
miRNA:   3'- gGGCUCCUgcGCGUGUgC-GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 25146 0.72 0.346741
Target:  5'- cCCCGcGGccgccccucccGCGgGgGC-CGCGCCCCCCg -3'
miRNA:   3'- -GGGCuCC-----------UGCgCgUGuGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 96094 0.72 0.346741
Target:  5'- gUCCGcgcGGGGCGCGccuCugACcCACCCCCCc -3'
miRNA:   3'- -GGGC---UCCUGCGC---GugUGcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 26257 0.72 0.354102
Target:  5'- -gCGAGGACgagGCGCACuCGCACCgCgCCu -3'
miRNA:   3'- ggGCUCCUG---CGCGUGuGCGUGGgG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.