miRNA display CGI


Results 101 - 120 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 53041 0.72 0.384636
Target:  5'- uCCCG-GGACGCgGCAUaccuccgaccgGCGgGgCCCCCg -3'
miRNA:   3'- -GGGCuCCUGCG-CGUG-----------UGCgUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 26444 0.72 0.384636
Target:  5'- gCgCGAcGACGCGgACGCGgGCCCgCCCc -3'
miRNA:   3'- -GgGCUcCUGCGCgUGUGCgUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 23575 0.72 0.384636
Target:  5'- cCCCGGGGGCgGCGCcccgGC-CGaGCCCgCCCa -3'
miRNA:   3'- -GGGCUCCUG-CGCG----UGuGCgUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 25047 0.72 0.384636
Target:  5'- gCCGcGGGAgGCGCGCAaGCGCaagagCCCCg -3'
miRNA:   3'- gGGC-UCCUgCGCGUGUgCGUGg----GGGG- -5'
5150 5' -61.9 NC_001798.1 + 138728 0.72 0.384636
Target:  5'- cCCCGGGccGGCGCGCuC-CGCGgCCCCg -3'
miRNA:   3'- -GGGCUC--CUGCGCGuGuGCGUgGGGGg -5'
5150 5' -61.9 NC_001798.1 + 108484 0.72 0.384636
Target:  5'- cCCCGAGG-CgGgGCcCACGUcccguCCCCCCg -3'
miRNA:   3'- -GGGCUCCuG-CgCGuGUGCGu----GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 54414 0.71 0.391743
Target:  5'- gCCGGgacaagauacaacGGACccgGCGCGacaACGCACCCCCg -3'
miRNA:   3'- gGGCU-------------CCUG---CGCGUg--UGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 135734 0.71 0.392537
Target:  5'- gCCGAGGuuAUGCGCgACGCGCugagacgaAUCCUCCg -3'
miRNA:   3'- gGGCUCC--UGCGCG-UGUGCG--------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 59231 0.71 0.392537
Target:  5'- cCCCGGGGcugucccCGCGaCACAuccCGCACCCggggCCCg -3'
miRNA:   3'- -GGGCUCCu------GCGC-GUGU---GCGUGGG----GGG- -5'
5150 5' -61.9 NC_001798.1 + 87285 0.71 0.392537
Target:  5'- uCCCu-GGuCGUGCugGCcgaccgccacaGCACCCCCCu -3'
miRNA:   3'- -GGGcuCCuGCGCGugUG-----------CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 54808 0.71 0.392537
Target:  5'- gCCCGcGGGCGuCGgGCuugGCGcCACCCCCg -3'
miRNA:   3'- -GGGCuCCUGC-GCgUG---UGC-GUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 108660 0.71 0.392537
Target:  5'- aCCCGGacGGcCGaCGCaACGCGcCGCCCCCg -3'
miRNA:   3'- -GGGCU--CCuGC-GCG-UGUGC-GUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 16887 0.71 0.397328
Target:  5'- gCCCGAGGGcCGCGUcuuuuugugcaaaaACAUccaaccaGCcCCCCCCu -3'
miRNA:   3'- -GGGCUCCU-GCGCG--------------UGUG-------CGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 102800 0.71 0.398934
Target:  5'- aCCCG-GGGCGCcgguuuuauacccGCGCuccgGCGCaggggcagacuccGCCCCCCa -3'
miRNA:   3'- -GGGCuCCUGCG-------------CGUG----UGCG-------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 78241 0.71 0.399738
Target:  5'- aUCCGGGccGACGUGCACcgggcgcucggcgGCGUGCCCCUg -3'
miRNA:   3'- -GGGCUC--CUGCGCGUG-------------UGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 149780 0.71 0.400543
Target:  5'- cCCCagcgccGGACGCGgACGCGaCGCUCCCa -3'
miRNA:   3'- -GGGcu----CCUGCGCgUGUGC-GUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 5738 0.71 0.400543
Target:  5'- gCCCGGGGccCGCGUcauccCGCGCuCCgCCCCa -3'
miRNA:   3'- -GGGCUCCu-GCGCGu----GUGCGuGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 93490 0.71 0.407837
Target:  5'- gCCCGgguacgaGGGGCGCcC-CACgGCGCCCCUCg -3'
miRNA:   3'- -GGGC-------UCCUGCGcGuGUG-CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 112313 0.71 0.408653
Target:  5'- uCCCGAGGcCGCcCuacggaauaaACGgACCCCCCg -3'
miRNA:   3'- -GGGCUCCuGCGcGug--------UGCgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 50399 0.71 0.408653
Target:  5'- --gGuAGGAUGUGCGaccgggcgGCGCGCCCCCCc -3'
miRNA:   3'- gggC-UCCUGCGCGUg-------UGCGUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.