miRNA display CGI


Results 81 - 100 of 389 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 93362 0.67 0.656216
Target:  5'- aCCGAGGugGaCGaCGC-CGgGCCggcggaCCCCa -3'
miRNA:   3'- gGGCUCCugC-GC-GUGuGCgUGG------GGGG- -5'
5150 5' -61.9 NC_001798.1 + 129332 0.67 0.656216
Target:  5'- cCUgGAGGACG-GC-CGCggaGCGCCCgCCg -3'
miRNA:   3'- -GGgCUCCUGCgCGuGUG---CGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 47057 0.67 0.655252
Target:  5'- aUCGGGGACGCGCaaugccgggGCGacaGCGCCggugugguguccgUCCCg -3'
miRNA:   3'- gGGCUCCUGCGCG---------UGUg--CGUGG-------------GGGG- -5'
5150 5' -61.9 NC_001798.1 + 8392 0.67 0.646566
Target:  5'- aCUGAGGAacUGgGUuacuGCACuuGCCCCCCc -3'
miRNA:   3'- gGGCUCCU--GCgCG----UGUGcgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 31342 0.67 0.646566
Target:  5'- gCgGGGGGCGCGCGCAgGCGCg---- -3'
miRNA:   3'- gGgCUCCUGCGCGUGUgCGUGggggg -5'
5150 5' -61.9 NC_001798.1 + 79961 0.67 0.646566
Target:  5'- uCCgGAGcGGCgGCGC-CGCGUccgccgccggGCCCCCg -3'
miRNA:   3'- -GGgCUC-CUG-CGCGuGUGCG----------UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 24124 0.67 0.646566
Target:  5'- cUCCGgcAGcGugGCGCGgGcCGUGCCCCaCCu -3'
miRNA:   3'- -GGGC--UC-CugCGCGUgU-GCGUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 50216 0.67 0.646566
Target:  5'- -gCGAGGAgGUGgAUAUGaCGCCCgCCg -3'
miRNA:   3'- ggGCUCCUgCGCgUGUGC-GUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 52967 0.67 0.646566
Target:  5'- gUCCGGGaGGCGCGCgaccggGCugGgCGgCCCgCCa -3'
miRNA:   3'- -GGGCUC-CUGCGCG------UGugC-GUgGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 135975 0.67 0.646566
Target:  5'- aCUGGaGACGCGUcguGCGCGUAUgUCCCg -3'
miRNA:   3'- gGGCUcCUGCGCG---UGUGCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 31640 0.67 0.646566
Target:  5'- cCCCGuGGugucugcgaGCGCGgACGCggccgggcccGCGCCgCCCg -3'
miRNA:   3'- -GGGCuCC---------UGCGCgUGUG----------CGUGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 50101 0.67 0.646566
Target:  5'- gCCGGgcuGGugGCGC-CGCGCAugucguuuCUCUCCg -3'
miRNA:   3'- gGGCU---CCugCGCGuGUGCGU--------GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 128831 0.67 0.646566
Target:  5'- cCCCGcGGACcccgGCGCcCcCGCGgCCUCCg -3'
miRNA:   3'- -GGGCuCCUG----CGCGuGuGCGUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 134372 0.67 0.646566
Target:  5'- gCCCGccGGC-CGCuccuCGCGcCGCCCUCCu -3'
miRNA:   3'- -GGGCucCUGcGCGu---GUGC-GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 73981 0.67 0.645601
Target:  5'- cUCCG-GGcCGcCGCGCAUGUguuccauuaucgaGCUCCCCa -3'
miRNA:   3'- -GGGCuCCuGC-GCGUGUGCG-------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 97552 0.67 0.640771
Target:  5'- gCgCGGGGACGCcCGCgagcgaggacggggaGCGCGgCCCCg -3'
miRNA:   3'- -GgGCUCCUGCGcGUG---------------UGCGUgGGGGg -5'
5150 5' -61.9 NC_001798.1 + 110896 0.67 0.636907
Target:  5'- aCCCGGcGGuuCGCGUGCGgccaGcCGCCCCCg -3'
miRNA:   3'- -GGGCU-CCu-GCGCGUGUg---C-GUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 57146 0.67 0.636907
Target:  5'- aCCGAGuacagccGCGgGCugGCGCccgggccggcGCCCUCCg -3'
miRNA:   3'- gGGCUCc------UGCgCGugUGCG----------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 43265 0.67 0.636907
Target:  5'- gCCGGGGGCGuCGUGCccUGCugCUCCg -3'
miRNA:   3'- gGGCUCCUGC-GCGUGu-GCGugGGGGg -5'
5150 5' -61.9 NC_001798.1 + 38475 0.67 0.636907
Target:  5'- uCCC----ACGCGCACGCcgGCAUCgCCCCg -3'
miRNA:   3'- -GGGcuccUGCGCGUGUG--CGUGG-GGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.