miRNA display CGI


Results 61 - 80 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 25253 0.68 0.560045
Target:  5'- aCCCGcAGGGCG-GCugGCGCcGCCagCCgCCg -3'
miRNA:   3'- -GGGC-UCCUGCgCGugUGCG-UGG--GG-GG- -5'
5150 5' -61.9 NC_001798.1 + 25424 0.73 0.311594
Target:  5'- cCUCGcuGGcCGCGCGCuGCGCcgccccGCCCCCCg -3'
miRNA:   3'- -GGGCu-CCuGCGCGUG-UGCG------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 25541 0.69 0.541162
Target:  5'- aCCCgGAGGACGUGCGCGUGgugAUCCUCUa -3'
miRNA:   3'- -GGG-CUCCUGCGCGUGUGCg--UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 25597 0.72 0.354102
Target:  5'- gCCGcGGGC-CGCGCcggggGCGgGCCCCCCc -3'
miRNA:   3'- gGGCuCCUGcGCGUG-----UGCgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 25705 0.66 0.713499
Target:  5'- gCCGccuGGGCGgGCAacuggaccgGCGCCCCCg -3'
miRNA:   3'- gGGCu--CCUGCgCGUgug------CGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 26040 0.81 0.095527
Target:  5'- gUgGAGGcCGCGCACGCGCGCCuguaCCCCg -3'
miRNA:   3'- gGgCUCCuGCGCGUGUGCGUGG----GGGG- -5'
5150 5' -61.9 NC_001798.1 + 26092 0.76 0.21952
Target:  5'- gCCgCGGGGccaacgugcgguaccGCGUGCGCACGCGCUucggCCCCg -3'
miRNA:   3'- -GG-GCUCC---------------UGCGCGUGUGCGUGG----GGGG- -5'
5150 5' -61.9 NC_001798.1 + 26257 0.72 0.354102
Target:  5'- -gCGAGGACgagGCGCACuCGCACCgCgCCu -3'
miRNA:   3'- ggGCUCCUG---CGCGUGuGCGUGGgG-GG- -5'
5150 5' -61.9 NC_001798.1 + 26408 0.69 0.513259
Target:  5'- gCUCGAGcccGACG-GCG-ACGCGCCCCCg -3'
miRNA:   3'- -GGGCUC---CUGCgCGUgUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 26444 0.72 0.384636
Target:  5'- gCgCGAcGACGCGgACGCGgGCCCgCCCc -3'
miRNA:   3'- -GgGCUcCUGCGCgUGUGCgUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 27608 0.67 0.627243
Target:  5'- --aGGGGGCGCGCGgG-GCugCCCUg -3'
miRNA:   3'- gggCUCCUGCGCGUgUgCGugGGGGg -5'
5150 5' -61.9 NC_001798.1 + 27637 0.68 0.607934
Target:  5'- gCCCGccGcCGcCGCccGCcuuCGCGCCCCCCc -3'
miRNA:   3'- -GGGCucCuGC-GCG--UGu--GCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 27935 0.66 0.675457
Target:  5'- gCCGGGGucccgGCGCcgGC-CGCGCCCCg- -3'
miRNA:   3'- gGGCUCCug---CGCG--UGuGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 28211 0.71 0.431051
Target:  5'- gCCgGAGGcCcCGCACGcCGCgccugccgccgccuGCCCCCCg -3'
miRNA:   3'- -GGgCUCCuGcGCGUGU-GCG--------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 28259 0.69 0.531801
Target:  5'- gCCGcgcaAGGAgCGCGgGcCGCaGCGCCCCCUu -3'
miRNA:   3'- gGGC----UCCU-GCGCgU-GUG-CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 28342 0.66 0.685033
Target:  5'- gCCUGAGccUGCGCcgGCG-GCgGCCCCCCg -3'
miRNA:   3'- -GGGCUCcuGCGCG--UGUgCG-UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 28379 0.79 0.128559
Target:  5'- gCCCGcGGACGCGC-CGCGCgggaagguacGCCUCCCc -3'
miRNA:   3'- -GGGCuCCUGCGCGuGUGCG----------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 28597 0.71 0.433584
Target:  5'- gCCUGGGaGACG-GC-CGCGCGCCUggCCCg -3'
miRNA:   3'- -GGGCUC-CUGCgCGuGUGCGUGGG--GGG- -5'
5150 5' -61.9 NC_001798.1 + 28949 0.66 0.713499
Target:  5'- uCCgCGAGGGCcCG-GCGC-CGCCCCgCCg -3'
miRNA:   3'- -GG-GCUCCUGcGCgUGUGcGUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 28986 0.69 0.522498
Target:  5'- cCCCaGGGGGCgGCGCcggccaacCGCGCGCCgCCg -3'
miRNA:   3'- -GGG-CUCCUG-CGCGu-------GUGCGUGGgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.