miRNA display CGI


Results 81 - 100 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 29377 0.68 0.550579
Target:  5'- cCCCGGGGGCGgGCACcacucaGgGCCgCgCCg -3'
miRNA:   3'- -GGGCUCCUGCgCGUGug----CgUGGgG-GG- -5'
5150 5' -61.9 NC_001798.1 + 29538 0.66 0.721004
Target:  5'- cCCCGccGGGGCGCGCGgCuauugggggaauCGUaaauGCCgCCCCu -3'
miRNA:   3'- -GGGC--UCCUGCGCGU-Gu-----------GCG----UGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 29619 0.67 0.63594
Target:  5'- cCCCGuGuGACGgucgggcCGCAUuCGCACCCCg- -3'
miRNA:   3'- -GGGCuC-CUGC-------GCGUGuGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 29812 0.7 0.485963
Target:  5'- cCCCGAGcGGC-CGC-CGCgGCAgaCCCCCg -3'
miRNA:   3'- -GGGCUC-CUGcGCGuGUG-CGUg-GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 29988 0.79 0.128559
Target:  5'- cCCCGuGGGC-CGUGCGC-CGCCCCCCg -3'
miRNA:   3'- -GGGCuCCUGcGCGUGUGcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 30412 0.73 0.318401
Target:  5'- gCCUGAuGGACGCgGC-CACGCccccggcccgGCCCCCg -3'
miRNA:   3'- -GGGCU-CCUGCG-CGuGUGCG----------UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 30820 0.71 0.425175
Target:  5'- aCCCGcGGACG-GCcC-CGCGCUCCCUg -3'
miRNA:   3'- -GGGCuCCUGCgCGuGuGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 30848 0.68 0.560045
Target:  5'- gCUGGGGGgacacacggucCGCGCccuguCGCcCACCCCCCc -3'
miRNA:   3'- gGGCUCCU-----------GCGCGu----GUGcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 31200 0.68 0.588688
Target:  5'- aCCCGAccGGCGCcCcCugGCGCCCCgCg -3'
miRNA:   3'- -GGGCUc-CUGCGcGuGugCGUGGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 31342 0.67 0.646566
Target:  5'- gCgGGGGGCGCGCGCAgGCGCg---- -3'
miRNA:   3'- gGgCUCCUGCGCGUGUgCGUGggggg -5'
5150 5' -61.9 NC_001798.1 + 31568 0.82 0.080145
Target:  5'- gUCG-GGGCGCGC-CGCGCGCCCCCg -3'
miRNA:   3'- gGGCuCCUGCGCGuGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 31640 0.67 0.646566
Target:  5'- cCCCGuGGugucugcgaGCGCGgACGCggccgggcccGCGCCgCCCg -3'
miRNA:   3'- -GGGCuCC---------UGCGCgUGUG----------CGUGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 31691 0.85 0.052047
Target:  5'- gCCGGuGGACGCGCAC-CGCGCgCCCCg -3'
miRNA:   3'- gGGCU-CCUGCGCGUGuGCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 31820 0.72 0.360821
Target:  5'- aCCCGGGGuccccCGCgGCACcaacacccccgguGC-CGCCCCCCa -3'
miRNA:   3'- -GGGCUCCu----GCG-CGUG-------------UGcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 31988 0.7 0.442089
Target:  5'- gCCaaGAGGGCG-GCGC-CGCGCCgggCCCCg -3'
miRNA:   3'- gGG--CUCCUGCgCGUGuGCGUGG---GGGG- -5'
5150 5' -61.9 NC_001798.1 + 32055 0.73 0.311594
Target:  5'- cCCCGGcGucCGCGgGCGcCGCGCCCCCg -3'
miRNA:   3'- -GGGCU-CcuGCGCgUGU-GCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 32329 0.68 0.554359
Target:  5'- gCCGAGGAagugugccaggaagaCGCGC-CACGCggagggcgGCCCCg- -3'
miRNA:   3'- gGGCUCCU---------------GCGCGuGUGCG--------UGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 32377 0.66 0.694571
Target:  5'- gCCCGGGGcccgcgacccgGCGCccggccuCACGCGCuACCUgCCCa -3'
miRNA:   3'- -GGGCUCC-----------UGCGc------GUGUGCG-UGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 32549 0.67 0.669695
Target:  5'- -aCGGGGAacguggcggaccugcUGCGgGC-CGCGgCCCCCg -3'
miRNA:   3'- ggGCUCCU---------------GCGCgUGuGCGUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 32611 0.83 0.072449
Target:  5'- cCCCGAGcACGCGCGCaacuGCGUgagGCCCCCCg -3'
miRNA:   3'- -GGGCUCcUGCGCGUG----UGCG---UGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.